Marc Robinson-Rechavi

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152 publications

2024 | 2023 | 2022 | 2021 | 2020 | 2019 | 2018 | 2017 | 2016 | 2015 | 2014 | 2013 | 2012 | 2011 | 2010 | 2009 | 2008 | 2007 | 2006 | 2005 | 2004 | 2003 | 2002 | 2001 | 2000 | 1999 | 1998 | 1997 |
2024
 
The SIB Swiss Institute of Bioinformatics Semantic Web of data.
SIB Swiss Institute of Bioinformatics RDF Group Members, Mendes de Farias T., 2024/01/05. Nucleic acids research, 52 (D1) pp. D44-D51. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_A29FECE3B301]
2023
Lessons learned to boost a bioinformatics knowledge base reusability, the Bgee experience.
Mendes de Farias T., Wollbrett J., Robinson-Rechavi M., Bastian F., 2023/08/17. GigaScience, 12 pp. giad058. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_D4A608774943]
Genome structures resolve the early diversification of teleost fishes.
Parey E., Louis A., Montfort J., Bouchez O., Roques C., Iampietro C., Lluch J., Castinel A., Donnadieu C., Desvignes T. et al., 2023/02/10. Science, 379 (6632) pp. 572-575. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_7F288BABFB22]
2022
X chromosomes show relaxed selection and complete somatic dosage compensation across Timema stick insect species.
Parker D.J., Jaron K.S., Dumas Z., Robinson-Rechavi M., Schwander T., 2022/12. Journal of evolutionary biology, 35 (12) pp. 1734-1750. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_08C40767A03A]
Parallel evolution of amphioxus and vertebrate small-scale gene duplications.
Brasó-Vives M., Marlétaz F., Echchiki A., Mantica F., Acemel R.D., Gómez-Skarmeta J.L., Hartasánchez D.A., Le Targa L., Pontarotti P., Tena J.J. et al., 2022/11/18. Genome biology, 23 (1) p. 243. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_B6794F5FB6F2]
Rhythmicity is linked to expression cost at the protein level but to expression precision at the mRNA level
Laloum David, Robinson-Rechavi Marc, 2022/09/12. PLOS Computational Biology, 18 (9) pp. e1010399. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_8DA78A121767]
An ancient truncated duplication of the anti-Müllerian hormone receptor type 2 gene is a potential conserved master sex determinant in the Pangasiidae catfish family.
Wen M., Pan Q., Jouanno E., Montfort J., Zahm M., Cabau C., Klopp C., Iampietro C., Roques C., Bouchez O. et al., 2022/08. Molecular ecology resources, 22 (6) pp. 2411-2428. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_72F2B4092924]
Dynamics of sex-biased gene expression during development in the stick insect Timema californicum.
Djordjevic J., Dumas Z., Robinson-Rechavi M., Schwander T., Parker D.J., 2022/08. Heredity, 129 (2) pp. 113-122. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_A0C665A95881]
Taxonbridge: an R package to create custom taxonomies based on the NCBI and GBIF taxonomies
Veldsman Werner P., Campli Giulia, Dind Sagane, Rech de Laval Valentine, Drage Harriet B., Waterhouse Robert M., Robinson-Rechavi Marc, 2022/05/04..
[URN][DOI][serval:BIB_16185728F41B]
Convergent consequences of parthenogenesis on stick insect genomes.
Jaron K.S., Parker D.J., Anselmetti Y., Tran Van P., Bast J., Dumas Z., Figuet E., François C.M., Hayward K., Rossier V. et al., 2022/02/25. Science advances, 8 (8) pp. eabg3842. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_F7578E44D8BF]
Convergent evolution of venom gland transcriptomes across Metazoa.
Zancolli G., Reijnders M., Waterhouse R.M., Robinson-Rechavi M., 2022/01/04. Proceedings of the National Academy of Sciences of the United States of America, 119 (1) pp. e2111392119. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_1D15F06B4071]
Bio-SODA UX: enabling natural language question answering over knowledge graphs with user disambiguation.
Sima A.C., Mendes de Farias T., Anisimova M., Dessimoz C., Robinson-Rechavi M., Zbinden E., Stockinger K., 2022. Distributed and parallel databases, 40 (2-3) pp. 409-440. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_EE90AD3795B0]
 
Creation and unification of development and life stage ontologies for animals
Niknejad Anne, Mungall Christopher J., Osumi-Sutherland David, Robinson-Rechavi Marc, Bastian Frederic B., 2022..
[DOI][serval:BIB_A85E6647A76E]
2021
OMAmer: tree-driven and alignment-free protein assignment to subfamilies outperforms closest sequence approaches.
Rossier V., Warwick Vesztrocy A., Robinson-Rechavi M., Dessimoz C., 2021/09/29. Bioinformatics, 37 (18) pp. 2866-2873. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_E9D32F404F19]
Haplotype divergence supports long-term asexuality in the oribatid mite Oppiella nova.
Brandt A., Tran Van P., Bluhm C., Anselmetti Y., Dumas Z., Figuet E., François C.M., Galtier N., Heimburger B., Jaron K.S. et al., 2021/09/21. Proceedings of the National Academy of Sciences of the United States of America, 118 (38) pp. e2101485118. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_A92AB05DA145]
The hourglass model of evolutionary conservation during embryogenesis extends to developmental enhancers with signatures of positive selection.
Liu J., Viales R.R., Khoueiry P., Reddington J.P., Girardot C., Furlong EEM, Robinson-Rechavi M., 2021/09. Genome research, 31 (9) pp. 1573-1581. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_7EF03DE26E06]
Bio-SODA: Enabling Natural Language Question Answering over Knowledge Graphs without Training Data
Sima Ana Claudia, Mendes de Farias Tarcisio, Anisimova Maria, Dessimoz Christophe, Robinson-Rechavi Marc, Zbinden Erich, Stockinger Kurt, 2021/07/06. 33rd International Conference on Scientific and Statistical Database Management. Peer-reviewed.
[URN][DOI][serval:BIB_A6616600154D]
First annotated draft genomes of nonmarine ostracods (Ostracoda, Crustacea) with different reproductive modes.
Tran Van P., Anselmetti Y., Bast J., Dumas Z., Galtier N., Jaron K.S., Martens K., Parker D.J., Robinson-Rechavi M., Schwander T. et al., 2021/04/15. G3, 11 (4) pp. jkab043. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_19612ACE0AC4]
Special Care Is Needed in Applying Phylogenetic Comparative Methods to Gene Trees with Speciation and Duplication Nodes.
Begum T., Robinson-Rechavi M., 2021/04/13. Molecular biology and evolution, 38 (4) pp. 1614-1626. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_C4CAC6CE8CD6]
 
Genomic Features of Parthenogenetic Animals.
Jaron K.S., Bast J., Nowell R.W., Ranallo-Benavidez T.R., Robinson-Rechavi M., Schwander T., 2021/03/12. The Journal of heredity, 112 (1) pp. 19-33. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_E1A133CAFF7A]
The Bgee suite: integrated curated expression atlas and comparative transcriptomics in animals.
Bastian F.B., Roux J., Niknejad A., Comte A., Fonseca Costa S.S., de Farias T.M., Moretti S., Parmentier G., Rech de Laval V., Rosikiewicz M. et al., 2021/01/08. Nucleic acids research, 49 (D1) pp. D831-D847. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_FD0CF4F734E7]
 
Performance of a phylogenetic independent contrast method and an improved pairwise comparison under different scenarios of trait evolution after speciation and duplication
Begum Tina, Serrano-Serrano Martha Liliana, Robinson-Rechavi Marc, 2021. Methods Ecol Evol, 12 pp. 1875-1887. Peer-reviewed.
[DOI][serval:BIB_E6A0AF8DC9DE]
2020
Single-cell transcriptomics allows novel insights into aging and circadian processes.
Fonseca Costa S.S., Robinson-Rechavi M., Ripperger J.A., 2020/12/04. Briefings in functional genomics, 19 (5-6) pp. 343-349. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_0223DAE8F649]
Robust inference of positive selection on regulatory sequences in the human brain.
Liu J., Robinson-Rechavi M., 2020/11. Science advances, 6 (48) pp. eabc9863. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_805F3C22323C]
Inter-embryo gene expression variability recapitulates the hourglass pattern of evo-devo.
Liu J., Frochaux M., Gardeux V., Deplancke B., Robinson-Rechavi M., 2020/09/19. BMC biology, 18 (1) p. 129. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_076B6D0800A4]
Correction to: Sex-specific changes in gene expression in response to estrogen pollution around the onset of sex differentiation in grayling (Salmonidae)
Selmoni Oliver M., Maitre Diane, Roux Julien, Wilkins Laetitia G. E., Marques da Cunha Lucas, Vermeirssen Etienne L. M., Knörr Susanne, Robinson-Rechavi Marc, Wedekind Claus, 2020/05/20. BMC Genomics, 21 (1) p. 371.
[URN][DOI][Pmid][serval:BIB_B83E6BB3F5EE]
Quality Matters: Biocuration Experts on the Impact of Duplication and Other Data Quality Issues in Biological Databases
Chen Qingyu, Britto Ramona, Erill Ivan, Jeffery Constance J., Liberzon Arthur, Magrane Michele, Onami Jun-ichi, Robinson-Rechavi Marc, Sponarova Jana, Zobel Justin et al., 2020/04/01. Genomics, Proteomics & Bioinformatics, 18 pp. 91-103. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_688EF9445320]
Methods detecting rhythmic gene expression are biologically relevant only for strong signal
Laloum David, Robinson-Rechavi Marc, 2020/03. PLOS Computational Biology, 16 (3) pp. 1-23.
[URN][DOI][serval:BIB_C090B1967D37]
OncoMX: A Knowledgebase for Exploring Cancer Biomarkers in the Context of Related Cancer and Healthy Data.
Dingerdissen H.M., Bastian F., Vijay-Shanker K., Robinson-Rechavi M., Bell A., Gogate N., Gupta S., Holmes E., Kahsay R., Keeney J. et al., 2020/03. JCO clinical cancer informatics, 4 pp. 210-220. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_BC34650B96ED]
Molecular Evolution and Gene Function
Robinson-Rechavi Marc, 2020. dans Phylogenetics in the Genomic Era, hal.inria.fr.
[URN][serval:BIB_BB2B81C3E623]
The Expression Comparison Tool in Bgee
Robinson-Rechavi Marc, Rech de Laval Valentine, Bastian Frédéric B., Wollbrett Julien, Bgee Team, 2020. dans Phylogenetics in the Genomic Era, hal.inria.fr.
[URN][serval:BIB_D44AAAA828A2]
2019
Identifying gene function and module connections by the integration of multispecies expression compendia
Li Hao, Rukina Daria, David Fabrice P.A., Li Terytty Yang, Oh Chang-Myung, Gao Arwen W., Katsyuba Elena, Bou Sleiman Maroun, Komljenovic Andrea, Huang Qingyao et al., 2019/12. Genome Research, 29 (12) pp. 2034-2045. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_7B783B226A9E]
Sex-biased gene expression is repeatedly masculinized in asexual females.
Parker D.J., Bast J., Jalvingh K., Dumas Z., Robinson-Rechavi M., Schwander T., 2019/10/11. Nature communications, 10 (1) p. 4638. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_BBF4929EFCF6]
Sex-specific changes in gene expression in response to estrogen pollution around the onset of sex differentiation in grayling (Salmonidae).
Selmoni O.M., Maitre D., Roux J., Wilkins LGE, Marques da Cunha L., Vermeirssen ELM, Knörr S., Robinson-Rechavi M., Wedekind C., 2019/07/15. BMC Genomics, 20 (1) p. 583. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_146003703B65]
Cross-species functional modules link proteostasis to human normal aging.
Komljenovic A., Li H., Sorrentino V., Kutalik Z., Auwerx J., Robinson-Rechavi M., 2019/07. PLoS computational biology, 15 (7) pp. e1007162. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_DB3E6C72F674]
Large-Scale Comparative Analysis of Codon Models Accounting for Protein and Nucleotide Selection.
Davydov I.I., Salamin N., Robinson-Rechavi M., 2019/06/01. Molecular biology and evolution, 36 (6) pp. 1316-1332. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_FF45CD1C1260]
Genomic signatures accompanying the dietary shift to phytophagy in polyphagan beetles.
Seppey M., Ioannidis P., Emerson B.C., Pitteloud C., Robinson-Rechavi M., Roux J., Escalona H.E., McKenna D.D., Misof B., Shin S. et al., 2019/05/17. Genome biology, 20 (1) p. 98. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_4EC401109BAD]
 
Genomic changes underlying host specialization in the bee gut symbiont Lactobacillus Firm5.
Ellegaard K.M., Brochet S., Bonilla-Rosso G., Emery O., Glover N., Hadadi N., Jaron K.S., van der Meer J.R., Robinson-Rechavi M., Sentchilo V. et al., 2019/05. Molecular ecology, 28 (9) pp. 2224-2237. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_37C4AFA6D4D6]
Repeated Evolution of Asexuality Involves Convergent Gene Expression Changes.
Parker D.J., Bast J., Jalvingh K., Dumas Z., Robinson-Rechavi M., Schwander T., 2019/02/01. Molecular biology and evolution, 36 (2) pp. 350-364. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_50533A2E2A2E]
Enabling semantic queries across federated bioinformatics databases.
Sima A.C., Mendes de Farias T., Zbinden E., Anisimova M., Gil M., Stockinger H., Stockinger K., Robinson-Rechavi M., Dessimoz C., 2019/01/01. Database, 2019. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_ED991CD0F569]
2018
Adaptive Evolution of Animal Proteins over Development: Support for the Darwin Selection Opportunity Hypothesis of Evo-Devo.
Liu J., Robinson-Rechavi M., 2018/12/01. Molecular biology and evolution, 35 (12) pp. 2862-2872. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_5705072272F0]
Developmental Constraints on Genome Evolution in Four Bilaterian Model Species.
Liu J., Robinson-Rechavi M., 2018/09/01. Genome biology and evolution, 10 (9) pp. 2266-2277. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_F61F6F919170]
BgeeDB, an R package for retrieval of curated expression datasets and for gene list expression localization enrichment tests.
Komljenovic A., Roux J., Wollbrett J., Robinson-Rechavi M., Bastian F.B., 2018. F1000Research, 5 p. 2748. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_0AA1ED033ECE]
2017
 
Low number of fixed somatic mutations in a long-lived oak tree.
Schmid-Siegert E., Sarkar N., Iseli C., Calderon S., Gouhier-Darimont C., Chrast J., Cattaneo P., Schütz F., Farinelli L., Pagni M. et al., 2017/12. Nature plants, 3 (12) pp. 926-929. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_66296D0251EE]
Sex differentiation in grayling (Salmonidae) goes through an all-male stage and is delayed in genetic males who instead grow faster.
Maitre D., Selmoni O.M., Uppal A., Marques da Cunha L., Wilkins LGE, Roux J., Mobley K.B., Castro I., Knörr S., Robinson-Rechavi M. et al., 2017/11/03. Scientific reports, 7 (1) p. 15024. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_F6A409506084]
Bayesian association scan reveals loci associated with human lifespan and linked biomarkers.
McDaid A.F., Joshi P.K., Porcu E., Komljenovic A., Li H., Sorrentino V., Litovchenko M., Bevers RPJ, Rüeger S., Reymond A. et al., 2017/07/27. Nature communications, 8 p. 15842. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_C06E0694F6CC]
Sex-specific changes in gene expression and delayed sex differentiation in response to estrogen pollution in grayling (Salmonidae)
Selmoni O. M., Maitre D., Roux J., Wilkins L. G. E., Marques da Cunha L., Vermeirssen E. L. M., Knörr S., Robinson-Rechavi M., Wedekind C., 2017/05/09..
[URN][DOI][serval:BIB_8B3A5682EAF5]
 
A benchmark of gene expression tissue-specificity metrics.
Kryuchkova-Mostacci N., Robinson-Rechavi M., 2017. Briefings in Bioinformatics, 18 (2) pp. 205-214. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_87132E302513]
Detection of Pathways Affected by Positive Selection in Primate Lineages Ancestral to Humans.
Daub J.T., Moretti S., Davydov I.I., Excoffier L., Robinson-Rechavi M., 2017. Molecular Biology and Evolution, 34 (6) pp. 1391-1402. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_E977192342AB]
No evidence for the radiation time lag model after whole genome duplications in Teleostei.
Laurent S., Salamin N., Robinson-Rechavi M., 2017. PLoS One, 12 (4) pp. e0176384. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_6A5C276B250D]
Selective Constraints on Coding Sequences of Nervous System Genes Are a Major Determinant of Duplicate Gene Retention in Vertebrates.
Roux J., Liu J., Robinson-Rechavi M., 2017. Molecular Biology and Evolution, 34 (11) pp. 2773-2791. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_C757F185D6C7]
2016
The SIB Swiss Institute of Bioinformatics' resources: focus on curated databases.
SIB Swiss Institute of Bioinformatics Members, Bultet L.A., 2016/01/04. Nucleic acids research, 44 (D1) pp. D27-37. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_71EF45D9A3D9]
State aggregation for fast likelihood computations in molecular evolution.
Davydov I.I., Robinson-Rechavi M., Salamin N., 2016. Bioinformatics, 33 pp. 354-362. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_54224013033C]
The Genome of the Toluene-Degrading Pseudomonas veronii Strain 1YdBTEX2 and Its Differential Gene Expression in Contaminated Sand.
Morales M., Sentchilo V., Bertelli C., Komljenovic A., Kryuchkova-Mostacci N., Bourdilloud A., Linke B., Goesmann A., Harshman K., Segers F. et al., 2016. PloS one, 11 (11) pp. e0165850. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_14197457242A]
Tissue-Specificity of Gene Expression Diverges Slowly between Orthologs, and Rapidly between Paralogs.
Kryuchkova-Mostacci N., Robinson-Rechavi M., 2016. PLoS Computational Biology, 12 (12) pp. e1005274. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_F27D450F2B07]
2015
Comparative genome analysis of Pseudomonas knackmussii B13, the first bacterium known to degrade chloroaromatic compounds.
Miyazaki R., Bertelli C., Benaglio P., Canton J., De Coi N., Gharib W.H., Gjoksi B., Goesmann A., Greub G., Harshman K. et al., 2015. Environmental Microbiology, 17 (1) pp. 91-104.
[URN][DOI][WoS][Pmid][serval:BIB_EBE76C19261B]
Detecting patterns of species diversification in the presence of both rate shifts and mass extinctions.
Laurent S., Robinson-Rechavi M., Salamin N., 2015. BMC Evolutionary Biology, 15 p. 157. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_01FF6A3D8DC9]
 
Genomics is changing Evo-Devo.
Robinson-Rechavi M., 2015. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution, 324 (4) p. 315.
[DOI][WoS][Pmid][serval:BIB_E8ACA475D130]
Inference of Evolutionary Forces Acting on Human Biological Pathways.
Daub J.T., Dupanloup I., Robinson-Rechavi M., Excoffier L., 2015. Genome Biology and Evolution, 7 (6) pp. 1546-1558. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_F1C43009CD42]
Sequencing and characterizing the genome of Estrella lausannensis as an undergraduate project: training students and biological insights.
Bertelli C., Aeby S., Chassot B., Clulow J., Hilfiker O., Rappo S., Ritzmann S., Schumacher P., Terrettaz C., Benaglio P. et al., 2015. Frontiers in Microbiology, 6 (101) p. 101. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_5BB2A564D83D]
The Confidence Information Ontology: a step towards a standard for asserting confidence in annotations.
Bastian F.B., Chibucos M.C., Gaudet P., Giglio M., Holliday G.L., Huang H., Lewis S.E., Niknejad A., Orchard S., Poux S. et al., 2015. Database, 2015 pp. bav043. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_60CACFAC405E]
Tissue-Specific Evolution of Protein Coding Genes in Human and Mouse.
Kryuchkova-Mostacci N., Robinson-Rechavi M., 2015. Plos One, 10 (6) pp. e0131673. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_B6BE63795D1F]
What to compare and how: Comparative transcriptomics for Evo-Devo.
Roux J., Rosikiewicz M., Robinson-Rechavi M., 2015. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution, 324 (4) pp. 372-382. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_E322E5E2A13A]
2014
Big data and other challenges in the quest for orthologs.
Sonnhammer E.L., Gabaldón T., Sousa da Silva A.W., Martin M., Robinson-Rechavi M., Boeckmann B., Thomas P.D., Dessimoz C., Quest for Orthologs consortium, 2014. Bioinformatics, 30 (21) pp. 2993-2998. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_172DE4708266]
 
Determinants of protein evolutionary rates in light of ENCODE functional genomics
Kryuchkova Nadezda, Robinson-Rechavi Marc, 2014. pp. A9 dans BMC Bioinformatics.
[DOI][serval:BIB_603F1CF898E3]
IQRray, a new method for Affymetrix microarray quality control, and the homologous organ conservation score, a new benchmark method for quality control metrics.
Rosikiewicz M., Robinson-Rechavi M., 2014. Bioinformatics, 30 (10) pp. 1392-1399. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_0E5C20608CA6]
Optimization strategies for fast detection of positive selection on phylogenetic trees.
Valle M., Schabauer H., Pacher C., Stockinger H., Stamatakis A., Robinson-Rechavi M., Salamin N., 2014. Bioinformatics, 30 (8) pp. 1129-1137. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_EE03C80A1584]
Patterns of positive selection in seven ant genomes.
Roux J., Privman E., Moretti S., Daub J.T., Robinson-Rechavi M., Keller L., 2014. Molecular Biology and Evolution, 31 (7) pp. 1661-1685. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_95722591AAD3]
Selectome update: quality control and computational improvements to a database of positive selection.
Moretti S., Laurenczy B., Gharib W.H., Castella B., Kuzniar A., Schabauer H., Studer R.A., Valle M., Salamin N., Stockinger H. et al., 2014. Nucleic Acids Research, 42 (1) pp. D917-D921. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_BD16E97A0D18]
Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon.
Haendel M.A., Balhoff J.P., Bastian F.B., Blackburn D.C., Blake J.A., Bradford Y., Comte A., Dahdul W.M., Dececchi T.A., Druzinsky R.E. et al., 2014. Journal of Biomedical Semantics, 5 p. 21. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_F76940F670C4]
2013
Community-wide plasmid gene mobilization and selection.
Sentchilo V., Mayer A.P., Guy L., Miyazaki R., Green Tringe S., Barry K., Malfatti S., Goessmann A., Robinson-Rechavi M., van der Meer J.R., 2013. ISME Journal, 7 (6) pp. 1173-1186.
[URN][DOI][WoS][Pmid][serval:BIB_B5128FCC3FB5]
 
Evidence for polygenic adaptation to pathogens in the human genome.
Daub J.T., Hofer T., Cutivet E., Dupanloup I., Quintana-Murci L., Robinson-Rechavi M., Excoffier L., 2013. Molecular Biology and Evolution, 30 (7) pp. 1544-1558. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_5B46808B83ED]
The branch-site test of positive selection is surprisingly robust but lacks power under synonymous substitution saturation and variation in GC.
Gharib W.H., Robinson-Rechavi M., 2013. Molecular Biology and Evolution, 30 (7) pp. 1675-1686. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_E31E37CD7B01]
The hourglass and the early conservation models--co-existing patterns of developmental constraints in vertebrates.
Piasecka B., Lichocki P., Moretti S., Bergmann S., Robinson-Rechavi M., 2013. Plos Genetics, 9 (4) pp. e1003476. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_B03DCB0498A7]
Uncovering hidden duplicated content in public transcriptomics data.
Rosikiewicz M., Comte A., Niknejad A., Robinson-Rechavi M., Bastian F.B., 2013. Database, 2013 pp. bat010. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_230AE9FE1902]
2012
Comparative analysis of human and mouse expression data illuminates tissue-specific evolutionary patterns of miRNAs.
Roux J., Gonzàlez-Porta M., Robinson-Rechavi M., 2012. Nucleic Acids Research, 40 (13) pp. 5890-5900. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_062426040422]
Comparative modular analysis of gene expression in vertebrate organs.
Piasecka B., Kutalik Z., Roux J., Bergmann S., Robinson-Rechavi M., 2012. Bmc Genomics, 13 p. 124. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_94FEE072331D]
Correcting for the bias due to expression specificity improves the estimation of constrained evolution of expression between mouse and human.
Piasecka B., Robinson-Rechavi M., Bergmann S., 2012. Bioinformatics, 28 (14) pp. 1865-1872. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_FFE8D8F98971]
gcodeml: A Grid-enabled Tool for Detecting Positive Selection in Biological Evolution
Moretti S., Murri R., Maffioletti S., Kuzniar A., Castella B, Salamin N., Robinson-Rechavi M., Stockinger H., 2012. pp. 59-68 dans Glatard T, Silverstein J (eds.) HealthGrid Applications and Technologies Meet Science Gateways for Life Sciences, IOS Press Books online.
[URN][DOI][serval:BIB_542C5BE6E2B7]
How much does the amphioxus genome represent the ancestor of chordates?
Louis A., Roest Crollius H., Robinson-Rechavi M., 2012. Briefings in Functional Genomics, 11 (2) pp. 89-95. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_093626E06B3F]
Recent advances in biocuration: meeting report from the fifth International Biocuration Conference.
Gaudet P., Arighi C., Bastian F., Bateman A., Blake J.A., Cherry M.J., D'Eustachio P., Finn R., Giglio M., Hirschman L. et al., 2012. Database, 2012 pp. bas036. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_C16E4B98CEB3]
Resolving the ortholog conjecture: orthologs tend to be weakly, but significantly, more similar in function than paralogs.
Altenhoff A.M., Studer R.A., Robinson-Rechavi M., Dessimoz C., 2012. PLoS Computational Biology, 8 (5) pp. e1002514. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_89CB0AF6A1E2]
SlimCodeML: An Optimized Version of CodeML for the Branch-Site Model
Schabauer H., Valle M., Pacher C., Stockinger H., Stamatakis A., Robinson-Rechavi M., Yang Z., Salamin N., 2012. pp. 700-708 dans Aluru S., Bader D.A. (eds.) HiCOMB (11th IEEE International Workshop on High Performance Computational Biology). Peer-reviewed, IEEE.
[URN][DOI][serval:BIB_5F7B13551FF8]
vHOG, a multispecies vertebrate ontology of homologous organs groups.
Niknejad A., Comte A., Parmentier G., Roux J., Bastian F.B., Robinson-Rechavi M., 2012. Bioinformatics, 28 (7) pp. 1017-1020. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_5605BDB61FC5]
2011
Age-dependent gain of alternative splice forms and biased duplication explain the relation between splicing and duplication.
Roux J., Robinson-Rechavi M., 2011. Genome Research, 21 (3) pp. 357-363. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_21E4AE52DF8C]
Conceptual framework and pilot study to benchmark phylogenomic databases based on reference gene trees.
Boeckmann B., Robinson-Rechavi M., Xenarios I., Dessimoz C., 2011. Briefings in Bioinformatics, 12 (5) pp. 423-435. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_3EF9A7BDC38C]
 
Evolution of the epithelial sodium channel and the sodium pump as limiting factors of aldosterone action on sodium transport.
Studer R.A., Person E., Robinson-Rechavi M., Rossier B.C., 2011. Physiological Genomics, 43 (13) pp. 844-854. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_FAC3750250F9]
Meta-analysis of estrogen response in MCF-7 distinguishes early target genes involved in signaling and cell proliferation from later target genes involved in cell cycle and DNA repair.
Jagannathan V., Robinson-Rechavi M., 2011. BMC Systems Biology, 5 (1) p. 138. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_8CDBA887EAAA]
 
The challenge of modeling nuclear receptor regulatory networks in mammalian cells.
Jagannathan V., Robinson-Rechavi M., 2011. Molecular and Cellular Endocrinology, 334 (1-2) pp. 91-97. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_64B60EC69445]
When orthologs diverge between human and mouse.
Gharib W.H., Robinson-Rechavi M., 2011. Briefings in Bioinformatics, 12 (5) pp. 436-441. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_006579177FCC]
2010
An ontology to clarify homology-related concepts.
Roux J., Robinson-Rechavi M., 2010. Trends in Genetics, 26 (3) pp. 99-102. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_611EAEEC4DD5]
 
Evolution moléculaire
Duret L., Bataillon T., Bierne N., Daubin V., Dutheil J., Gautier C., Glemin S., Gouy M., Heyer E., Marais G. et al., 2010. pp. 123-182 dans Thomas F., Lefevre T., Raymond M. (eds.) Biologie évolutive chap. 5, de Boeck.
[serval:BIB_F2FDBFECBF3D]
Homolonto: generating homology relationships by pairwise alignment of ontologies and application to vertebrate anatomy.
Parmentier G., Bastian F.B., Robinson-Rechavi M., 2010. Bioinformatics, 26 (14) pp. 1766-1771. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_1DA8753017CD]
 
Interactome mapping of the phosphatidylinositol 3-kinase-mammalian target of rapamycin pathway identifies deformed epidermal autoregulatory factor-1 as a new glycogen synthase kinase-3 interactor.
Pilot-Storck F., Chopin E., Rual J.F., Baudot A., Dobrokhotov P., Robinson-Rechavi M., Brun C., Cusick M.E., Hill D.E., Schaeffer L. et al., 2010. Molecular and Cellular Proteomics, 9 (7) pp. 1578-1593. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_99B5C8832AB6]
Large-scale analysis of orthologs and paralogs under covarion-like and constant-but-different models of amino acid evolution.
Studer R.A., Robinson-Rechavi M., 2010. Molecular Biology and Evolution, 27 (11) pp. 2618-2627. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_47EE94487936]
Molecular evidence for a functional ecdysone signaling system in Brugia malayi.
Tzertzinis G., Egaña A.L., Palli S.R., Robinson-Rechavi M., Gissendanner C.R., Liu C., Unnasch T.R., Maina C.V., 2010. PLoS Neglected Tropical Diseases, 4 (3) pp. e625. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_3EC23B792936]
Molecular signaling in zebrafish development and the vertebrate phylotypic period
Comte A., Roux J., Robinson-Rechavi M., 2010. Evolution and Development, 12 (2) pp. 144-156. Peer-reviewed.
[URN][DOI][WoS][serval:BIB_AD3A9D7540C9]
 
Phylogenetic Code in the Cloud - Can it Meet the Expectations?
Kraut A., Moretti S., Robinson-Rechavi M., Stockinger H., Flanders D., 2010. Studies in Health Technology and Informatics, 159 pp. 55-63. Peer-reviewed.
[DOI][Pmid][serval:BIB_1F5A96C03D27]
2009
Bioinformatics for evolutionary developmental biology
Robinson-Rechavi M., 2009. pp. 355-378 dans Appel R.D., Feytmans E. (eds.) Bioinformatics: A Swiss Perspective chap. 13, World Scientific Publishing Company.
[URN][serval:BIB_55CE3435659A]
 
Evidence for an episodic model of protein sequence evolution.
Studer R.A., Robinson-Rechavi M., 2009. Biochemical Society transactions, 37 (Pt 4) pp. 783-786. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_43CBA0DC9689]
How confident can we be that orthologs are similar, but paralogs differ?
Studer R.A., Robinson-Rechavi M., 2009. Trends in Genetics, 25 (5) pp. 210-216. Peer-reviewed.
[URN][DOI][WoS][serval:BIB_39F8106EE698]
Large-Scale Analyses of Positive Selection Using Codon Models
Studer R.A., Robinson-Rechavi M., 2009. pp. 217-236 dans Pontarotti P. (eds.) Evolutionary Biology: Concept, Modeling, and Application chap. 13, Springer‐Verlag.
[URN][DOI][serval:BIB_69764375A158]
Selectome: a database of positive selection.
Proux E., Studer R.A., Moretti S., Robinson-Rechavi M., 2009. Nucleic Acids Research, 37 (Database issue) pp. D404-D407. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_92B1AFBBA077]
 
Structural and evolutionary innovation of the heterodimerization interface between USP and the ecdysone receptor ECR in insects.
Iwema T., Chaumot A., Studer R.A., Robinson-Rechavi M., Billas I.M., Moras D., Laudet V., Bonneton F., 2009. Molecular Biology and Evolution, 26 (4) pp. 753-768. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_6C84793F923C]
The expansion of amino-acid repeats is not associated to adaptive evolution in mammalian genes.
Cruz F., Roux J., Robinson-Rechavi M., 2009. BMC Genomics, 10 (1) p. 619. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_AE3C1C5E6707]
2008
Bgee: integrating and comparing heterogeneous transcriptome data among species
Bastian F., Parmentier G., Roux J., Moretti S., Laudet V., Robinson-Rechavi M., 2008. pp. 124-131 dans Istrail S., Pevzner P., Waterman M. (eds.) Data Integration in Life Sciences, Lecture Notes in Computer Science. Peer-reviewed, Springer.
[URN][DOI][serval:BIB_5A6F9D63F92D]
Developmental constraints on vertebrate genome evolution.
Roux J., Robinson-Rechavi M., 2008. PLoS Genetics, 4 (12) pp. e1000311. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_F11302BD61EC]
 
Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita.
Abad P., Gouzy J., Aury J.M., Castagnone-Sereno P., Danchin E.G., Deleury E., Perfus-Barbeoch L., Anthouard V., Artiguenave F., Blok V.C. et al., 2008. Nature Biotechnology, 26 (8) pp. 909-915. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_0FED258C5533]
 
Orthologues of the Drosophila melanogaster E75 molting control gene in the filarial parasites Brugia malayi and Dirofilaria immitis.
Crossgrove K., Maina C.V., Robinson-Rechavi M., Lochner M.C., 2008. Molecular and Biochemical Parasitology, 157 (1) pp. 92-97. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_3BBFB417BF02]
Perspective: from molecular endocrinology of mouse to genomic endocrinology of animals.
Robinson-Rechavi M., 2008. Molecular and Cellular Endocrinology, 293 (1-2) pp. 2-4.
[URN][DOI][WoS][Pmid][serval:BIB_C469EC983655]
 
Pervasive positive selection on duplicated and nonduplicated vertebrate protein coding genes.
Studer R.A., Penel S., Duret L., Robinson-Rechavi M., 2008. Genome Research, 18 (9) pp. 1393-1402. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_08713507D4D6]
 
The amphioxus genome and the evolution of the chordate karyotype.
Putnam N.H., Butts T., Ferrier D.E., Furlong R.F., Hellsten U., Kawashima T., Robinson-Rechavi M., Shoguchi E., Terry A., Yu J.K. et al., 2008. Nature, 453 (7198) pp. 1064-1071. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_335B81A678B3]
 
The amphioxus genome illuminates vertebrate origins and cephalochordate biology.
Holland L.Z., Albalat R., Azumi K., Benito-Gutiérrez E., Blow M.J., Bronner-Fraser M., Brunet F., Butts T., Candiani S., Dishaw L.J. et al., 2008. Genome Research, 18 (7) pp. 1100-1111. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_987DB6FE8B4B]
2007
A protein interaction atlas for the nuclear receptors: properties and quality of a hub-based dimerisation network.
Amoutzias G.D., Pichler E.E., Mian N., De Graaf D., Imsiridou A., Robinson-Rechavi M., Bornberg-Bauer E., Robertson D.L., Oliver S.G., 2007. BMC Systems Biology, 1 p. 34. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_8C6B61D79078]
 
One billion years of bZIP transcription factor evolution: conservation and change in dimerization and DNA-binding site specificity.
Amoutzias G.D., Veron A.S., Weiner J., Robinson-Rechavi M., Bornberg-Bauer E., Oliver S.G., Robertson D.L., 2007. Molecular Biology and Evolution, 24 (3) pp. 827-835.
[DOI][WoS][Pmid][serval:BIB_A168E290C027]
2006
Contribution of electrostatic interactions, compactness and quaternary structure to protein thermostability: lessons from structural genomics of Thermotoga maritima.
Robinson-Rechavi M., Alibés A., Godzik A., 2006. Journal of Molecular Biology, 356 (2) pp. 547-557. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_DE7A148B9A94]
 
Gene loss and evolutionary rates following whole-genome duplication in teleost fishes.
Brunet F.G., Roest Crollius H., Paris M., Aury J.M., Gibert P., Jaillon O., Laudet V., Robinson-Rechavi M., 2006. Molecular Biology and Evolution, 23 (9) pp. 1808-1816. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_90789EA4F9CB]
Neofunctionalization in vertebrates: the example of retinoic acid receptors.
Escriva H., Bertrand S., Germain P., Robinson-Rechavi M., Umbhauer M., Cartry J., Duffraisse M., Holland L., Gronemeyer H., Laudet V., 2006. PLoS Genetics, 2 (7) pp. e102. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_9B994D87AC3D]
2005
 
A conserved retinoid X receptor (RXR) from the mollusk Biomphalaria glabrata transactivates transcription in the presence of retinoids.
Bouton D., Escriva H., de Mendonça R.L., Glineur C., Bertin B., Noël C., Robinson-Rechavi M., de Groot A., Cornette J., Laudet V. et al., 2005. Journal of Molecular Endocrinology, 34 (2) pp. 567-582. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_41B0E841AA18]
 
Explosive lineage-specific expansion of the orphan nuclear receptor HNF4 in nematodes.
Robinson-Rechavi M., Maina C.V., Gissendanner C.R., Laudet V., Sluder A., 2005. Journal of Molecular Evolution, 60 (5) pp. 577-586.
[DOI][WoS][Pmid][serval:BIB_9196CB34590C]
 
Les poissons : une duplication génomique réussie
Robinson-Rechavi M., 2005. Biofutur, 254 pp. 29-33. Peer-reviewed.
[WoS][serval:BIB_BFFE216B8EB5]
 
Structural genomics of thermotoga maritima proteins shows that contact order is a major determinant of protein thermostability.
Robinson-Rechavi M., Godzik A., 2005. Structure, 13 (6) pp. 857-860.
[DOI][WoS][Pmid][serval:BIB_88A740162689]
2004
 
Evolutionary genomics of nuclear receptors: from twenty-five ancestral genes to derived endocrine systems.
Bertrand S., Brunet F.G., Escriva H., Parmentier G., Laudet V., Robinson-Rechavi M., 2004. Molecular Biology and Evolution, 21 (10) pp. 1923-1937.
[DOI][WoS][Pmid][serval:BIB_C4066A213A2D]
 
Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype.
Jaillon O., Aury J.M., Brunet F., Petit J.L., Stange-Thomann N., Mauceli E., Bouneau L., Fischer C., Ozouf-Costaz C., Bernot A. et al., 2004. Nature, 431 (7011) pp. 946-957.
[DOI][WoS][Pmid][serval:BIB_402583637C48]
 
Phylogenetic dating and characterization of gene duplications in vertebrates: the cartilaginous fish reference.
Robinson-Rechavi M., Boussau B., Laudet V., 2004. Molecular Biology and Evolution, 21 (3) pp. 580-586.
[DOI][WoS][Pmid][serval:BIB_94C2A0759739]
 
Update of NUREBASE: nuclear hormone receptor functional genomics.
Ruau D., Duarte J., Ourjdal T., Perrière G., Laudet V., Robinson-Rechavi M., 2004. Nucleic Acids Research, 32 (Database issue) pp. D165-D167.
[DOI][WoS][Pmid][serval:BIB_9DA05444ED38]
2003
 
Bioinformatics of nuclear receptors.
Robinson-Rechavi M., Laudet V., 2003. Methods in Enzymology, 364 pp. 95-118.
[DOI][WoS][Pmid][serval:BIB_F41EDCF97163]
 
Evidence for two distinct functional glucocorticoid receptors in teleost fish.
Bury N.R., Sturm A., Le Rouzic P., Lethimonier C., Ducouret B., Guiguen Y., Robinson-Rechavi M., Laudet V., Rafestin-Oblin M.E., Prunet P., 2003. Journal of Molecular Endocrinology, 31 (1) pp. 141-156.
[DOI][WoS][Pmid][serval:BIB_5B32425BB5FE]
 
Inventing a sex-specific gene: a conserved role of DMRT1 in teleost fishes plus a recent duplication in the medaka Oryzias latipes resulted in DMY.
Lutfalla G., Roest Crollius H., Brunet F.G., Laudet V., Robinson-Rechavi M., 2003. Journal of Molecular Evolution, 57 (Suppl 1) pp. S148-S153.
[DOI][WoS][Pmid][serval:BIB_FECDD6DFB606]
 
Molecular evolution of angrogen receptors in fish
Douard V., Robinson-Rechavi M., Laudet V., Guiguen Y., 2003. Fish Physiology and Biochemistry, 28 (1-4) pp. 207-208. Peer-reviewed.
[DOI][WoS][serval:BIB_84AA70FE06E5]
 
Nuclear receptors are markers of animal genome evolution.
Escrivá García H., Laudet V., Robinson-Rechavi M., 2003. Journal of Structural and Functional Genomics, 3 (1-4) pp. 177-184.
[DOI][Pmid][serval:BIB_7719A0CB03D7]
 
Rapid divergence of the ecdysone receptor in Diptera and Lepidoptera suggests coevolution between ECR and USP-RXR.
Bonneton F., Zelus D., Iwema T., Robinson-Rechavi M., Laudet V., 2003. Molecular Biology and Evolution, 20 (4) pp. 541-553.
[DOI][WoS][Pmid][serval:BIB_2D3C67757A81]
 
The nuclear receptor superfamily.
Robinson-Rechavi M., Escriva Garcia H., Laudet V., 2003. Journal of Cell Science, 116 (Pt 4) pp. 585-586.
[DOI][WoS][Pmid][serval:BIB_64E2AC8ABD82]
2002
 
Characterization of oestrogen receptors in zebrafish (Danio rerio).
Bardet P.L., Horard B., Robinson-Rechavi M., Laudet V., Vanacker J.M., 2002. Journal of Molecular Endocrinology, 28 (3) pp. 153-163.
[DOI][WoS][Pmid][serval:BIB_8DE3ED904289]
 
NUREBASE: database of nuclear hormone receptors.
Duarte J., Perrière G., Laudet V., Robinson-Rechavi M., 2002. Nucleic Acids Research, 30 (1) pp. 364-368.
[DOI][WoS][Pmid][serval:BIB_A44CB893F4DD]
2001
 
An ancestral whole-genome duplication may not have been responsible for the abundance of duplicated fish genes.
Robinson-Rechavi M., Marchand O., Escriva H., Laudet V., 2001. Current Biology, 11 (12) pp. R458-R459.
[DOI][WoS][Pmid][serval:BIB_DF6FCFC481A1]
 
Euteleost fish genomes are characterized by expansion of gene families.
Robinson-Rechavi M., Marchand O., Escriva H., Bardet P.L., Zelus D., Hughes S., Laudet V., 2001. Genome Research, 11 (5) pp. 781-788.
[DOI][WoS][Pmid][serval:BIB_28AB4513BA82]
 
Evolutionary rates of duplicate genes in fish and mammals.
Robinson-Rechavi M., Laudet V., 2001. Molecular Biology and Evolution, 18 (4) pp. 681-683.
[WoS][Pmid][serval:BIB_84ABEF83C5A3]
 
How many nuclear hormone receptors are there in the human genome?
Robinson-Rechavi M., Carpentier A.S., Duffraisse M., Laudet V., 2001. Trends in Genetics, 17 (10) pp. 554-556.
[DOI][WoS][Pmid][serval:BIB_99E03031CB99]
 
Re: Revisiting recent challenges to the ancient fish-specific genome duplication hypothesis
Robinson-Rechavi M., Marchand O., Escriva H., Laudet V., 2001. Current Biology, 11 (24) pp. R1007-R1008.
[DOI][WoS][serval:BIB_6CFF2C43B0E6]
 
Usage optimization of unevenly sampled data through the combination of quartet trees: A eutherian draft phylogeny based on 640 nuclear and mitochondrial proteins
Robinson-Rechavi M., Graur D., 2001. Israel Journal of Zoology, 47 (3) pp. 259-270. Peer-reviewed.
[DOI][WoS][serval:BIB_6388C496A90B]
2000
 
Fast evolution of interleukin-2 in mammals and positive selection in ruminants.
Zelus D., Robinson-Rechavi M., Delacre M., Auriault C., Laudet V., 2000. Journal of Molecular Evolution, 51 (3) pp. 234-244.
[WoS][Pmid][serval:BIB_DB61D6AA834B]
 
Nuclear gene LCAT supports rodent monophyly.
Robinson-Rechavi M., Ponger L., Mouchiroud D., 2000. Molecular Biology and Evolution, 17 (9) pp. 1410-1412.
[WoS][Pmid][serval:BIB_3665EDB39D96]
 
Regulation of heat-shock response in bacteria
Ron E. Z., Segal G., Sirkis R., Robinson M., Graur D., 2000. pp. 649-655 dans Bell C. R., Brylinsky M., Johnson-Green P. (eds.) Microbial biosystems : new frontiers, Atlantic Canada Society for Microbial Ecology.
[serval:BIB_1670E9C6C08F]
 
RRTree: relative-rate tests between groups of sequences on a phylogenetic tree.
Robinson-Rechavi M., Huchon D., 2000. Bioinformatics, 16 (3) pp. 296-297.
[DOI][WoS][Pmid][serval:BIB_936DEEA56F2E]
1999
 
Control elements in the regulation of bacterial heat shock response
Ron E. Z., Segal G., Robinson M., Graur D., 1999. pp. 143-152 dans Rosenberg E. (eds.) Microbial ecology and infectious disease chap. 12, ASM Press.
[serval:BIB_2F9D559402EA]
 
Evolutionary biology of the nuclear receptor superfamily
Escriva H., Robinson M., Laudet V., 1999. pp. 1-28 dans Picard D. (eds.) Nuclear receptors: a practical approach chap. 1, Oxford University Press.
[serval:BIB_6D390D42FF07]
 
JaDis: computing distances between nucleic acid sequences.
Gonçalves I., Robinson M., Perrière G., Mouchiroud D., 1999. Bioinformatics, 15 (5) pp. 424-425.
[DOI][WoS][Pmid][serval:BIB_8BE9916816BE]
1998
 
Sensitivity of the relative-rate test to taxonomic sampling.
Robinson M., Gouy M., Gautier C., Mouchiroud D., 1998. Molecular Biology and Evolution, 15 (9) pp. 1091-1098.
[WoS][Pmid][serval:BIB_1EAF3F71ADE9]
1997
 
Evolution of isochores in rodents.
Robinson M., Gautier C., Mouchiroud D., 1997. Molecular Biology and Evolution, 14 (8) pp. 823-828.
[WoS][Pmid][serval:BIB_8F06CD3DBACA]
 
Impact of changes in GC content on the silent molecular clock in murids.
Mouchiroud D., Robinson M., Gautier C., 1997. Gene, 205 (1-2) pp. 317-322.
[DOI][WoS][Pmid][serval:BIB_11E5C314FB70]
 
Molecular phylogeny of rodents, with special emphasis on murids: evidence from nuclear gene LCAT.
Robinson M., Catzeflis F., Briolay J., Mouchiroud D., 1997. Molecular Phylogenetics and Evolution, 8 (3) pp. 423-434.
[DOI][WoS][Pmid][serval:BIB_06EC541DE4E1]
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