Frédéric Schütz

Publications | Mémoires et thèses

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34 publications

2019 | 2018 | 2017 | 2016 | 2015 | 2014 | 2013 | 2012 | 2011 | 2010 | 2009 | 2008 | 2005 | 2004 | 2003 |
 
Worldwide distribution of blood values in elite track and field athletes: Biomarkers of altered erythropoiesis.
Robinson N., Saugy J., Schütz F., Faiss R., Baume N., Giraud S., Saugy M., 2019/04. Drug testing and analysis, 11 (4) pp. 567-577. Peer-reviewed.
Tissue- and sex-specific small RNAomes reveal sex differences in response to the environment.
Bezler A., Braukmann F., West S.M., Duplan A., Conconi R., Schütz F., Gönczy P., Piano F., Gunsalus K., Miska E.A. et al., 2019. PLoS Genetics, 15 (2) pp. e1007905. Peer-reviewed.
ABPS: An R Package for Calculating the Abnormal Blood Profile Score.
Schütz F., Zollinger A., 2018. Frontiers in Physiology, 9 p. 1638. Peer-reviewed.
 
Low number of fixed somatic mutations in a long-lived oak tree.
Schmid-Siegert E., Sarkar N., Iseli C., Calderon S., Gouhier-Darimont C., Chrast J., Cattaneo P., Schütz F., Farinelli L., Pagni M. et al., 2017/12. Nature plants, 3 (12) pp. 926-929. Peer-reviewed.
Diurnal regulation of RNA polymerase III transcription is under the control of both the feeding-fasting response and the circadian clock.
Mange F., Praz V., Migliavacca E., Willis I.M., Schütz F., Hernandez N., CycliX Consortium, 2017/06. Genome research, 27 (6) pp. 973-984. Peer-reviewed.
Identification of a novel PPARβ/δ/miR-21-3p axis in UV-induced skin inflammation.
Degueurce G., D'Errico I., Pich C., Ibberson M., Schütz F., Montagner A., Sgandurra M., Mury L., Jafari P., Boda A. et al., 2016. EMBO Molecular Medicine, 8 (8) pp. 919-936. Peer-reviewed.
 
Presence of Leishmania RNA Virus 1 in Leishmania guyanensis Increases the Risk of First-Line Treatment Failure and Symptomatic Relapse.
Bourreau E., Ginouves M., Prévot G., Hartley M.A., Gangneux J.P., Robert-Gangneux F., Dufour J., Sainte-Marie D., Bertolotti A., Pratlong F. et al., 2016. Journal of Infectious Diseases, 213 (1) pp. 105-111. Peer-reviewed.
The SIB Swiss Institute of Bioinformatics' resources: focus on curated databases.
SIB Swiss Institute of Bioinformatics Members, 2016. Nucleic Acids Research, 44 (D1) pp. D27-D37.
 
Validation of the Mass-Extraction-Window for Quantitative Methods Using Liquid Chromatography High Resolution Mass Spectrometry.
Glauser G., Grund B., Gassner A.L., Menin L., Henry H., Bromirski M., Schütz F., McMullen J., Rochat B., 2016. Analytical Chemistry, 88 (6) pp. 3264-3271. Peer-reviewed.
 
Endothelial, but not smooth muscle, peroxisome proliferator-activated receptor β/δ regulates vascular permeability and anaphylaxis.
Wawrzyniak M., Pich C., Gross B., Schütz F., Fleury S., Quemener S., Sgandurra M., Bouchaert E., Moret C., Mury L. et al., 2015. Journal of Allergy and Clinical Immunology, 135 (6) pp. 1625-1635.e5. Peer-reviewed.
Increased diversity of egg-associated bacteria on brown trout (Salmo trutta) at elevated temperatures.
Wilkins L.G., Rogivue A., Schütz F., Fumagalli L., Wedekind C., 2015. Scientific Reports, 5 p. 17084. Peer-reviewed.
Reduced phototropism in pks mutants may be due to altered auxin-regulated gene expression or reduced lateral auxin transport.
Kami C., Allenbach L., Zourelidou M., Ljung K., Schütz F., Isono E., Watahiki M.K., Yamamoto K.T., Schwechheimer C., Fankhauser C., 2014. Plant Journal, 77 (3) pp. 393-403. Peer-reviewed.
HCFC1 is a common component of active human CpG-island promoters and coincides with ZNF143, THAP11, YY1, and GABP transcription factor occupancy.
Michaud J., Praz V., James Faresse N., Jnbaptiste C.K., Tyagi S., Schütz F., Herr W., 2013. Genome Research, 23 (6) pp. 907-916.
Hepatic glucose sensing is required to preserve β cell glucose competence.
Seyer P., Vallois D., Poitry-Yamate C., Schütz F., Metref S., Tarussio D., Maechler P., Staels B., Lanz B., Grueter R. et al., 2013. Journal of Clinical Investigation, 123 (4) pp. 1662-1676.
Mechanisms and evolutionary patterns of mammalian and avian dosage compensation.
Julien P., Brawand D., Soumillon M., Necsulea A., Liechti A., Schütz F., Daish T., Grützner F., Kaessmann H., 2012. PLoS Biology, 10 (5) pp. e1001328.
 
Copy number variation modifies expression time courses.
Chaignat E., Yahya-Graison E.A., Henrichsen C.N., Chrast J., Schütz F., Pradervand S., Reymond A., 2011. Genome Research, 21 (1) pp. 106-113.
Leishmania RNA virus controls the severity of mucocutaneous leishmaniasis.
Ives A., Ronet C., Prevel F., Ruzzante G., Fuertes-Marraco S., Schutz F., Zangger H., Revaz-Breton M., Lye L.F., Hickerson S.M. et al., 2011. Science, 331 (6018) pp. 775-778.
Protein-Binding Microarray Analysis of Tumor Suppressor AP2α Target Gene Specificity.
Kerschgens J., Renaud S., Schütz F., Grasso L., Egener-Kuhn T., Delaloye J.F., Lehr H.A., Vogel H., Mermod N., 2011. Plos One, 6 (8) pp. e22895.
EuroDia: a beta-cell gene expression resource.
Liechti R., Csárdi G., Bergmann S., Schütz F., Sengstag T., Boj S.F., Servitja J.M., Ferrer J., Van Lommel L., Schuit F. et al., 2010. Database, 2010 pp. baq024.
Phenotypic consequences of copy number variation: insights from Smith-Magenis and Potocki-Lupski syndrome mouse models.
Ricard G., Molina J., Chrast J., Gu W., Gheldof N., Pradervand S., Schütz F., Young J.I., Lupski J.R., Reymond A. et al., 2010. PLoS Biology, 8 (11) pp. e1000543. Peer-reviewed.
 
The effect of translocation-induced nuclear reorganization on gene expression.
Harewood L., Schütz F., Boyle S., Perry P., Delorenzi M., Bickmore W.A., Reymond A., 2010. Genome Research, 20 (5) pp. 554-564. Peer-reviewed.
The rapamycin-sensitive phosphoproteome reveals that TOR controls protein kinase A toward some but not all substrates.
Soulard A., Cremonesi A., Moes S., Schütz F., Jenö P., Hall M.N., 2010. Molecular Biology of the Cell, 21 (19) pp. 3475-3486. Peer-reviewed.
 
Transcriptional and post-transcriptional profile of human chromosome 21
Nikolaev S. I., Deutsch S., Genolet R., Borel C., Parand L., Ucla C., Schutz F., Duriaux Sail G., Dupre Y., Jaquier-Gubler P. et al., 2009/08/01. Genome Research, 19 (8) pp. 1471-1479.
 
Segmental copy number variation shapes tissue transcriptomes.
Henrichsen C.N., Vinckenbosch N., Zöllner S., Chaignat E., Pradervand S., Schütz F., Ruedi M., Kaessmann H., Reymond A., 2009. Nature Genetics, 41 (4) pp. 424-429. Peer-reviewed.
 
c-Cbl expression levels regulate the functional responses of human central and effector memory CD4 T cells.
Brembilla N.C., Weber J., Rimoldi D., Pradervand S., Schütz F., Pantaleo G., Rüegg C., Quadroni M., Harshman K., Doucey M.A., 2008. Blood, 112 (3) pp. 652-660.
 
Genotypic features of lentivirus transgenic mice.
Sauvain M.O., Dorr A.P., Stevenson B., Quazzola A., Naef F., Wiznerowicz M., Schütz F., Jongeneel V., Duboule D., Spitz F. et al., 2008. Journal of Virology, 82 (14) pp. 7111-7119. Peer-reviewed.
Integrative analysis of RUNX1 downstream pathways and target genes.
Michaud J., Simpson K.M., Escher R., Buchet-Poyau K., Beissbarth T., Carmichael C., Ritchie M.E., Schütz F., Cannon P., Liu M. et al., 2008. BMC Genomics, 9 (363) p. 363.
 
MAMOT: hidden Markov modeling tool.
Schütz F., Delorenzi M., 2008. Bioinformatics, 24 (11) pp. 1399-1400. Peer-reviewed.
Meta-analysis of gene expression profiles in breast cancer: toward a unified understanding of breast cancer subtyping and prognosis signatures.
Wirapati P., Sotiriou C., Kunkel S., Farmer P., Pradervand S., Haibe-Kains B., Desmedt C., Ignatiadis M., Sengstag T., Schütz F. et al., 2008. Breast Cancer Research, 10 (4) pp. R65.
 
Relative protein quantification by isobaric SILAC with immonium ion splitting (ISIS)
Colzani M., Schutz F., Potts A., Waridel P., Quadroni M., 2008. Molecular and Cellular Proteomics, 7 (5) pp. 927-937. Peer-reviewed.
 
An evaluation, comparison, and accurate benchmarking of several publicly available MS/MS search algorithms: Sensitivity and specificity analysis
Kapp Eugene, Schütz Frédéric, Connolly Lisa, Chakel John, Meza Jose, Miller Christine, Fenyo David, Eng Jimmy, Adkins Joshua, Omenn Gilbert et al., 2005/08. PROTEOMICS, 5 (13) pp. 3475-3490.
 
A Proteome Strategy for Fractionating Proteins and Peptides Using Continuous Free-Flow Electrophoresis Coupled Off-Line to Reversed-Phase High-Performance Liquid Chromatography
Moritz Robert L., Ji Hong, Schütz Frédéric, Connolly Lisa M., Kapp Eugene A., Speed Terence P., Simpson Richard J., 2004/08. Analytical Chemistry, 76 (16) pp. 4811-4824.
 
Deriving statistical models for predicting peptide tandem MS product ion intensities
Schütz F., Kapp E.A., Simpson R.J., Speed T.P., 2003/12/01. Biochemical Society Transactions, 31 (6) pp. 1479-1483.
 
Mining a Tandem Mass Spectrometry Database To Determine the Trends and Global Factors Influencing Peptide Fragmentation
Kapp Eugene A., Schütz Frédéric, Reid Gavin E., Eddes James S., Moritz Robert L., O'Hair Richard A. J., Speed Terence P., Simpson Richard J., 2003/11. Analytical Chemistry, 75 (22) pp. 6251-6264.
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