Daniele Silvestro

Publications | Phd and Masters theses

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38 publications

2023 | 2022 | 2021 | 2020 | 2019 | 2018 | 2017 | 2016 | 2015 | 2014 | 2013 |
2023
 
Ontogeny and phylogeny of mating behaviour: social heteroch rony in primates.
Génin F., Rambeloarivony H., Silvestro D., Masters J.C., 2023/07/01. Theoretical biology forum, 116 (1-2) pp. 15-50. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_FF98699BCB91]
2022
Short-term paleogeographic reorganizations and climate events shaped diversification of North American freshwater gastropods over deep time.
Neubauer T.A., Harzhauser M., Hartman J.H., Silvestro D., Scotese C.R., Czaja A., Vermeij G.J., Wilke T., 2022/09/16. Scientific reports, 12 (1) p. 15572. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_59F9B4687558]
2021
Fossil-Informed Models Reveal a Boreotropical Origin and Divergent Evolutionary Trajectories in the Walnut Family (Juglandaceae).
Zhang Q., Ree R.H., Salamin N., Xing Y., Silvestro D., 2021/12/16. Systematic biology, 71 (1) pp. 242-258. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_C1BA117F09FD]
 
Fossil data support a pre-Cretaceous origin of flowering plants.
Silvestro D., Bacon C.D., Ding W., Zhang Q., Donoghue PCJ, Antonelli A., Xing Y., 2021/04. Nature ecology & evolution, 5 (4) pp. 449-457. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_1D5BD4D622BA]
On the Effect of Asymmetrical Trait Inheritance on Models of Trait Evolution.
Duchen P., Alfaro M.L., Rolland J., Salamin N., Silvestro D., 2021/02/10. Systematic biology, 70 (2) pp. 376-388. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_FDE71488549F]
2020
 
A multi‐platform package for the analysis of intra‐ and interspecific trait evolution
Gaboriau Théo, Mendes Fábio K., Joly Simon, Silvestro Daniele, Salamin Nicolas, 2020/07/30. Methods in Ecology and Evolution.
[DOI][serval:BIB_C6610E18F7CB]
 
A 450 million years long latitudinal gradient in age-dependent extinction.
Silvestro D., Castiglione S., Mondanaro A., Serio C., Melchionna M., Piras P., Di Febbraro M., Carotenuto F., Rook L., Raia P., 2020/03. Ecology letters, 23 (3) pp. 439-446. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_F00A948C74FB]
 
Brain expansion in early hominins predicts carnivore extinctions in East Africa.
Faurby S., Silvestro D., Werdelin L., Antonelli A., 2020/03. Ecology letters, 23 (3) pp. 537-544. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_8C60CDD7B0C0]
2019
 
Simultaneous Bayesian inference of phylogeny and molecular coevolution.
Meyer X., Dib L., Silvestro D., Salamin N., 2019/03/12. Proceedings of the National Academy of Sciences of the United States of America, 116 (11) pp. 5027-5036. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_AA4DD85D4A30]
Early Arrival and Climatically-Linked Geographic Expansion of New World Monkeys from Tiny African Ancestors.
Silvestro D., Tejedor M.F., Serrano-Serrano M.L., Loiseau O., Rossier V., Rolland J., Zizka A., Höhna S., Antonelli A., Salamin N., 2019. Systematic Biology, 68 (1) pp. 78-92. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_2044A2BD7D99]
2018
Estimating Age-Dependent Extinction: Contrasting Evidence from Fossils and Phylogenies.
Hagen O., Andermann T., Quental T.B., Antonelli A., Silvestro D., 2018/05/01. Systematic biology, 67 (3) pp. 458-474. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_F3935019E99E]
 
The impact of endothermy on the climatic niche evolution and the distribution of vertebrate diversity.
Rolland J., Silvestro D., Schluter D., Guisan A., Broennimann O., Salamin N., 2018/03. Nature ecology & evolution, 2 (3) pp. 459-464. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_0C415C45047B]
Clownfishes evolution below and above the species level.
Rolland J., Silvestro D., Litsios G., Faye L., Salamin N., 2018/02/28. Proceedings. Biological sciences, 285 (1873) pp. NA. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_341335ED4810]
Amazonia is the primary source of Neotropical biodiversity.
Antonelli A., Zizka A., Carvalho F.A., Scharn R., Bacon C.D., Silvestro D., Condamine F.L., 2018. Proceedings of the National Academy of Sciences of the United States of America, 115 (23) pp. 6034-6039. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_C0814DB9CDAE]
 
Building up biogeography: Pattern to process
Pearse W.D., Barbosa A. M., Fritz S.A., Keith S.A., Harmon L.J., Harte J., Silvestro D., Xiao X., Davies T.J., 2018. Journal of Biogeography, 45 (6) pp. 1223-1230. Peer-reviewed.
[DOI][WoS][serval:BIB_5A1DE7285523]
Closing the gap between palaeontological and neontological speciation and extinction rate estimates.
Silvestro D., Warnock RCM, Gavryushkina A., Stadler T., 2018. Nature Communications, 9 (1) p. 5237. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_2AEE50A84161]
Conceptual and empirical advances in Neotropical biodiversity research.
Antonelli A., Ariza M., Albert J., Andermann T., Azevedo J., Bacon C., Faurby S., Guedes T., Hoorn C., Lohmann L.G. et al., 2018. PeerJ, 6 pp. e5644. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_24EE06DC135E]
 
Evolution of the sabertooth mandible: A deadly ecomorphological specialization
Piras P., Silvestro D., Carotenuto F., Castiglione S., Kotsakis A., Maiorino L., Melchionna M., Mondanaro A., Sansalone G., Serio C. et al., 2018. Palaeogeography, Palaeoclimatology, Palaeoecology, 496 pp. 166-174. Peer-reviewed.
[DOI][WoS][serval:BIB_0C070429A323]
Publisher Correction: The impact of endothermy on the climatic niche evolution and the distribution of vertebrate diversity.
Rolland J., Silvestro D., Schluter D., Guisan A., Broenniman O., Salamin N., 2018. Nature Ecology & Evolution, 2 (3) p. 578. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_5A2DADC0C319]
2017
 
The Pliocene marine megafauna extinction and its impact on functional diversity.
Pimiento C., Griffin J.N., Clements C.F., Silvestro D., Varela S., Uhen M.D., Jaramillo C., 2017/08. Nature ecology & evolution, 1 (8) pp. 1100-1106. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_7AF0F8A936BB]
Recent origin and rapid speciation of Neotropical orchids in the world's richest plant biodiversity hotspot.
Pérez-Escobar O.A., Chomicki G., Condamine F.L., Karremans A.P., Bogarín D., Matzke N.J., Silvestro D., Antonelli A., 2017/07. The New phytologist, 215 (2) pp. 891-905. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_9B0431F4A001]
Toward a Self-Updating Platform for Estimating Rates of Speciation and Migration, Ages, and Relationships of Taxa.
Antonelli A., Hettling H., Condamine F.L., Vos K., Nilsson R.H., Sanderson M.J., Sauquet H., Scharn R., Silvestro D., Töpel M. et al., 2017/03/01. Systematic biology, 66 (2) pp. 152-166. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_9BFA9953E75C]
Bayesian estimation of multiple clade competition from fossil data
Silvestro D., Pires M.M., Quental T.B., Salamin N., 2017. Evolutionary Ecology Research, 18 pp. 41-59. Peer-reviewed.
[URN][WoS][serval:BIB_9717D8A0D667]
Environmentally driven extinction and opportunistic origination explain fern diversification patterns.
Lehtonen S., Silvestro D., Karger D.N., Scotese C., Tuomisto H., Kessler M., Peña C., Wahlberg N., Antonelli A., 2017. Scientific Reports, 7 (1) p. 4831. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_528E64F7E2E2]
2016
 
Bridging Inter- and Intraspecific Trait Evolution with a Hierarchical Bayesian Approach.
Kostikova A., Silvestro D., Pearman P.B., Salamin N., 2016/05. Systematic biology, 65 (3) pp. 417-431. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_8BEFF5A5A573]
Fossil biogeography: a new model to infer dispersal, extinction and sampling from palaeontological data.
Silvestro D., Zizka A., Bacon C.D., Cascales-Miñana B., Salamin N., Antonelli A., 2016. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences, 371 (1691) p. 20150225.
[URN][DOI][WoS][Pmid][serval:BIB_EFCCECA146BB]
2015
An engine for global plant diversity: highest evolutionary turnover and emigration in the American tropics
Antonelli , Zizka , Silvestro , Scharn , Cascales-Miñana , Bacon , 2015. Frontiers In Genetics, 6 p. 130. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_5BF575CD342F]
Biological evidence supports an early and complex emergence of the Isthmus of Panama.
Bacon C.D., Silvestro D., Jaramillo C., Smith B.T., Chakrabarty P., Antonelli A., 2015. Proceedings of the National Academy of Sciences of the United States of America, 112 (19) pp. 6110-6115.
[URN][DOI][WoS][Pmid][serval:BIB_A47182D2B4F9]
 
Continental faunal exchange and the asymmetrical radiation of carnivores.
Pires M.M., Silvestro D., Quental T.B., 2015. Proceedings. Biological Sciences / the Royal Society, 282 (1817) p. 20151952.
[DOI][WoS][Pmid][serval:BIB_70D2C44CD206]
Decoupled evolution of floral traits and climatic preferences in a clade of Neotropical Gesneriaceae.
Serrano-Serrano M.L., Perret M., Guignard M., Chautems A., Silvestro D., Salamin N., 2015. BMC Evolutionary Biology, 15 p. 247.
[URN][DOI][WoS][Pmid][serval:BIB_ED9C4BA24091]
 
Measurement Errors Should Always Be Incorporated in Phylogenetic Comparative Analysis
Silvestro D., Kostikova A., Litsios G., Pearman P.B., Salamin N., 2015. Methods in Ecology and Evolution, 6 (3) pp. 340-346.
[DOI][WoS][serval:BIB_A1850873FC48]
 
Reply to Lessios and Marko et al.: Early and progressive migration across the Isthmus of Panama is robust to missing data and biases.
Bacon C.D., Silvestro D., Jaramillo C., Smith B.T., Chakrabarty P., Antonelli A., 2015. Proceedings of the National Academy of Sciences of the United States of America, 112 (43) pp. E5767-E5768.
[DOI][WoS][Pmid][serval:BIB_E8077C7FA43E]
 
The role of clade competition in the diversification of North American canids.
Silvestro D., Antonelli A., Salamin N., Quental T.B., 2015. Proceedings of the National Academy of Sciences of the United States of America, 112 (28) pp. 8684-8689.
[DOI][WoS][Pmid][serval:BIB_EC2A94F93014]
2014
Bayesian estimation of speciation and extinction from incomplete fossil occurrence data.
Silvestro D., Schnitzler J., Liow L.H., Antonelli A., Salamin N., 2014. Systematic Biology, 63 (3) pp. 349-367.
[URN][DOI][WoS][Pmid][serval:BIB_B79937CF9331]
Disentangling the effects of key innovations on the diversification of Bromelioideae (bromeliaceae).
Silvestro D., Zizka G., Schulte K., 2014. Evolution, 68 (1) pp. 163-175.
[URN][DOI][WoS][Pmid][serval:BIB_0949331C3383]
Evolutionary footprint of coevolving positions in genes.
Dib L., Silvestro D., Salamin N., 2014. Bioinformatics, 30 (9) pp. 1241-1249.
[URN][DOI][WoS][Pmid][serval:BIB_EA95317606C6]
 
The red island and the seven dwarfs: body size reduction in Cheirogaleidae
Masters J.C., Genin F., Silvestro D., Lister A.M., DelPero M., 2014. Journal of Biogeography, 41 (10) pp. 1833-1847.
[DOI][WoS][serval:BIB_93BB64798729]
2013
 
Seeing the Wood through the Trees: The Current State of Higher Systematics in the Strepsirhini.
Masters J.C., Silvestro D., Génin F., Delpero M., 2013. Folia Primatologica, 84 (3-5) pp. 201-219.
[DOI][WoS][Pmid][serval:BIB_7562476AB61D]
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