Philipp Engel

Publications | Phd and Masters theses

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65 publications

In press | 2024 | 2023 | 2022 | 2021 | 2020 | 2019 | 2018 | 2017 | 2016 | 2015 | 2014 | 2013 | 2012 | 2011 | 2010 | 2009 | 2007 |
In press
Neuroactive metabolites modulated by the gut microbiota in honey bees.
Cabirol A., Moriano-Gutierrez S., Engel P. Molecular microbiology. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_3ADF7D01186D]
2024
 
An engineered bacterial symbiont allows noninvasive biosensing of the honey bee gut environment.
Chhun A., Moriano-Gutierrez S., Zoppi F., Cabirol A., Engel P., Schaerli Y., 2024/03. PLoS biology, 22 (3) pp. e3002523. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_88028872E2EA]
Host-derived organic acids enable gut colonization of the honey bee symbiont Snodgrassella alvi.
Quinn A., El Chazli Y., Escrig S., Daraspe J., Neuschwander N., McNally A., Genoud C., Meibom A., Engel P., 2024/02. Nature microbiology, 9 (2) pp. 477-489. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_5EE5F5ED8979]
 
Spatial structure, chemotaxis and quorum sensing shape bacterial biomass accumulation in complex porous media.
Scheidweiler D., Bordoloi A.D., Jiao W., Sentchilo V., Bollani M., Chhun A., Engel P., de Anna P., 2024/01/02. Nature communications, 15 (1) p. 191. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_C15F89398E71]
2023
 
Targeted treatment of injured nestmates with antimicrobial compounds in an ant society.
Frank E.T., Kesner L., Liberti J., Helleu Q., LeBoeuf A.C., Dascalu A., Sponsler D.B., Azuma F., Economo E.P., Waridel P. et al., 2023/12/29. Nature communications, 14 (1) p. 8446. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_9260126B191C]
 
From microbiome composition to functional engineering, one step at a time.
Burz S.D., Causevic S., Dal Co A., Dmitrijeva M., Engel P., Garrido-Sanz D., Greub G., Hapfelmeier S., Hardt W-D, Hatzimanikatis V. et al., 2023/12/20. Microbiology and molecular biology reviews, 87 (4) pp. e0006323. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_422DE1C48246]
 
Turnover of strain-level diversity modulates functional traits in the honeybee gut microbiome between nurses and foragers.
Baud GLC, Prasad A., Ellegaard K.M., Engel P., 2023/12/08. Genome biology, 24 (1) p. 283. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_EFD880F71B9B]
 
Social network position is a major predictor of ant behavior, microbiota composition, and brain gene expression.
Kay T., Liberti J., Richardson T.O., McKenzie S.K., Weitekamp C.A., La Mendola C., Rüegg M., Kesner L., Szombathy N., McGregor S. et al., 2023/07. PLoS biology, 21 (7) pp. e3002203. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_830347E3AE65]
 
A phylogenomic and comparative genomic analysis of Commensalibacter, a versatile insect symbiont.
Botero J., Sombolestani A.S., Cnockaert M., Peeters C., Borremans W., De Vuyst L., Vereecken N.J., Michez D., Smagghe G., Bonilla-Rosso G. et al., 2023/04/29. Animal microbiome, 5 (1) p. 25. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_63EA6D4A6F50]
 
Deep Divergence and Genomic Diversification of Gut Symbionts of Neotropical Stingless Bees.
Sarton-Lohéac G., Nunes da Silva C.G., Mazel F., Baud G., de Bakker V., Das S., El Chazli Y., Ellegaard K., Garcia-Garcera M., Glover N. et al., 2023/04/25. mBio, 14 (2) pp. e0353822. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_43DDCAB27B31]
 
Integration host factor regulates colonization factors in the bee gut symbiont Frischella perrara.
Schmidt K., Santos-Matos G., Leopold-Messer S., El Chazli Y., Emery O., Steiner T., Piel J., Engel P., 2023/04/14. eLife, 12 pp. e76182. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_04CA444001AB]
2022
 
The gut microbiota affects the social network of honeybees.
Liberti J., Kay T., Quinn A., Kesner L., Frank E.T., Cabirol A., Richardson T.O., Engel P., Keller L., 2022/10. Nature ecology & evolution, 6 (10) pp. 1471-1479. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_185C1F4D6366]
Extensive diversity and rapid turnover of phage defense repertoires in cheese-associated bacterial communities.
Somerville V., Schowing T., Chabas H., Schmidt R.S., von Ah U., Bruggmann R., Engel P., 2022/08/27. Microbiome, 10 (1) p. 137. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_0B0F961C038E]
 
Home or hospital birth: the neonatal microbiota perspective.
Stojanov M., Das S., Odent M., Engel P., Baud D., 2022/04. The Lancet. Microbe, 3 (4) pp. e247. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_AA3FDAB82C60]
 
Mild chronic exposure to pesticides alters physiological markers of honey bee health without perturbing the core gut microbiota.
Almasri H., Liberti J., Brunet J.L., Engel P., Belzunces L.P., 2022/03/11. Scientific reports, 12 (1) p. 4281. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_B19401C23607]
Functional strain redundancy and persistent phage infection in Swiss hard cheese starter cultures.
Somerville V., Berthoud H., Schmidt R.S., Bachmann H.P., Meng Y.H., Fuchsmann P., von Ah U., Engel P., 2022/02. The ISME journal, 16 (2) pp. 388-399. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_DC7315AEE03F]
2021
 
Niche partitioning facilitates coexistence of closely related honey bee gut bacteria.
Brochet S., Quinn A., Mars RAT, Neuschwander N., Sauer U., Engel P., 2021/07/19. eLife, 10 pp. e68583. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_73E6B4B711C6]
 
Impact of Chronic Exposure to Sublethal Doses of Glyphosate on Honey Bee Immunity, Gut Microbiota and Infection by Pathogens.
Castelli L., Balbuena S., Branchiccela B., Zunino P., Liberti J., Engel P., Antúnez K., 2021/04/15. Microorganisms, 9 (4) p. 845. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_0E29F3E9E76D]
 
A prevalent and culturable microbiota links ecological balance to clinical stability of the human lung after transplantation.
Das S., Bernasconi E., Koutsokera A., Wurlod D.A., Tripathi V., Bonilla-Rosso G., Aubert J.D., Derkenne M.F., Mercier L., Pattaroni C. et al., 2021/04/09. Nature communications, 12 (1) p. 2126. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_231E626287AA]
 
Mechanisms underlying gut microbiota-host interactions in insects.
Schmidt K., Engel P., 2021/01/28. The Journal of experimental biology, 224 (Pt 2) pp. jeb207696. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_97B2C6556658]
2020
 
Suppression of High-Fat Diet-Induced Obesity by Platycodon Grandiflorus in Mice Is Linked to Changes in the Gut Microbiota.
Ke W., Bonilla-Rosso G., Engel P., Wang P., Chen F., Hu X., 2020/09/01. The Journal of nutrition, 150 (9) pp. 2364-2374. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_06F0B1AC3835]
 
Vast Differences in Strain-Level Diversity in the Gut Microbiota of Two Closely Related Honey Bee Species.
Ellegaard K.M., Suenami S., Miyazaki R., Engel P., 2020/07/06. Current biology, 30 (13) pp. 2520-2531.e7. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_C8719CEC381F]
 
The gut microbiota - brain axis of insects.
Liberti J., Engel P., 2020/06. Current opinion in insect science, 39 pp. 6-13. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_3BEE2B42158E]
 
Honey bees harbor a diverse gut virome engaging in nested strain-level interactions with the microbiota.
Bonilla-Rosso G., Steiner T., Wichmann F., Bexkens E., Engel P., 2020/03/31. Proceedings of the National Academy of Sciences of the United States of America, 117 (13) pp. 7355-7362. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_01A113BD45E8]
 
Gut microbiota structure differs between honeybees in winter and summer.
Kešnerová L., Emery O., Troilo M., Liberti J., Erkosar B., Engel P., 2020/03. The ISME journal, 14 (3) pp. 801-814. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_BCEAEF436C65]
2019
 
High dietary fat intake induces a microbiota signature that promotes food allergy.
Hussain M., Bonilla-Rosso G., Kwong Chung CKC, Bäriswyl L., Rodriguez M.P., Kim B.S., Engel P., Noti M., 2019/07. The Journal of allergy and clinical immunology, 144 (1) pp. 157-170.e8. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_FDCCEC65868D]
 
Genomic changes underlying host specialization in the bee gut symbiont Lactobacillus Firm5.
Ellegaard K.M., Brochet S., Bonilla-Rosso G., Emery O., Glover N., Hadadi N., Jaron K.S., van der Meer J.R., Robinson-Rechavi M., Sentchilo V. et al., 2019/05. Molecular ecology, 28 (9) pp. 2224-2237. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_37C4AFA6D4D6]
Bacterial communities within Phengaris (Maculinea) alcon caterpillars are shifted following transition from solitary living to social parasitism of Myrmica ant colonies.
Szenteczki M.A., Pitteloud C., Casacci L.P., Kešnerová L., Whitaker MRL, Engel P., Vila R., Alvarez N., 2019/04. Ecology and evolution, 9 (8) pp. 4452-4464. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_DC22A357DABE]
Genomic diversity landscape of the honey bee gut microbiota.
Ellegaard K.M., Engel P., 2019/01/25. Nature communications, 10 (1) p. 446. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_DD4F991C3500]
2018
Author Correction: Herbivorous turtle ants obtain essential nutrients from a conserved nitrogen-recycling gut microbiome.
Hu Y., Sanders J.G., Łukasik P., D'Amelio C.L., Millar J.S., Vann D.R., Lan Y., Newton J.A., Schotanus M., Kronauer DJC et al., 2018/06/19. Nature communications, 9 (1) p. 2440. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_5052A4E08A8E]
Functional roles and metabolic niches in the honey bee gut microbiota.
Bonilla-Rosso G., Engel P., 2018/06. Current opinion in microbiology, 43 pp. 69-76. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_61BC487052BB]
Herbivorous turtle ants obtain essential nutrients from a conserved nitrogen-recycling gut microbiome.
Hu Y., Sanders J.G., Łukasik P., D'Amelio C.L., Millar J.S., Vann D.R., Lan Y., Newton J.A., Schotanus M., Kronauer DJC et al., 2018/03/06. Nature communications, 9 (1) p. 964. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_71C25548145E]
 
Origin and Evolution of the Bartonella Gene Transfer Agent.
Tamarit D., Neuvonen M.M., Engel P., Guy L., Andersson SGE, 2018/02/01. Molecular biology and evolution, 35 (2) pp. 451-464. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_506D6C3BBA94]
Gut microbiota composition is associated with environmental landscape in honey bees.
Jones J.C., Fruciano C., Hildebrand F., Al Toufalilia H., Balfour N.J., Bork P., Engel P., Ratnieks F.L., Hughes W.O., 2018. Ecology and Evolution, 8 (1) pp. 441-451. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_F4A339BFCFE9]
New Reference Genome Sequences for 17 Bacterial Strains of the Honey Bee Gut Microbiota.
Ellegaard K.M., Engel P., 2018. Microbiology Resource Announcements, 7 (3). Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_4B25746BF5A7]
The gut microbiome is associated with behavioural task in honey bees
Jones J. C., Fruciano C., Marchant J., Hildebrand F., Forslund S., Bork P., Engel P., Hughes W. O. H., 2018. Insectes Sociaux, 65 (3) pp. 419-429. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_60B583F32E6D]
2017
Disentangling metabolic functions of bacteria in the honey bee gut.
Kešnerová L., Mars RAT, Ellegaard K.M., Troilo M., Sauer U., Engel P., 2017/12. PLoS biology, 15 (12) pp. e2003467. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_3880396A281C]
A bacterial toxin-antitoxin module is the origin of inter-bacterial and inter-kingdom effectors of Bartonella.
Harms A., Liesch M., Körner J., Québatte M., Engel P., Dehio C., 2017/10. PLoS genetics, 13 (10) pp. e1007077. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_FF0AB8BA36F9]
 
Nitrogen conservation, conserved: 46 million years of N-recycling by the core symbionts of turtle ants
Hu Yi, Sanders Jon G., Łukasik Piotr, D'Amelio Catherine L., Millar John S., Vann David R., Lan Yemin, Newton Justin A., Schotanus Mark, Wertz John T. et al., 2017/09/07..
[DOI][serval:BIB_9B6932E6A292]
Genomic changes associated with the evolutionary transition of an insect gut symbiont into a blood-borne pathogen.
Segers F.H., Kešnerová L., Kosoy M., Engel P., 2017/05. The ISME journal, 11 (5) pp. 1232-1244. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_B5B443F45425]
 
Immune system stimulation by the gut symbiont Frischella perrara in the honey bee (Apis mellifera).
Emery O., Schmidt K., Engel P., 2017/05. Molecular ecology, 26 (9) pp. 2576-2590. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_9FCFA0B5BABB]
Evolutionary Dynamics of Pathoadaptation Revealed by Three Independent Acquisitions of the VirB/D4 Type IV Secretion System in Bartonella.
Harms A., Segers F.H., Quebatte M., Mistl C., Manfredi P., Körner J., Chomel B.B., Kosoy M., Maruyama S., Engel P. et al., 2017. Genome Biology and Evolution, 9 (3) pp. 761-776. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_2E0AC829D502]
2016
The Bee Microbiome: Impact on Bee Health and Model for Evolution and Ecology of Host-Microbe Interactions.
Engel P., Kwong W.K., McFrederick Q., Anderson K.E., Barribeau S.M., Chandler J.A., Cornman R.S., Dainat J., de Miranda J.R., Doublet V. et al., 2016/04/26. mBio, 7 (2) pp. e02164-15. Peer-reviewed.
[URN][DOI][Pmid][serval:BIB_63624302EF6E]
Bartonella apis sp. nov., a honey bee gut symbiont of the class Alphaproteobacteria.
Kešnerová L., Moritz R., Engel P., 2016. International Journal of Systematic and Evolutionary Microbiology, 66 (1) pp. 414-421. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_714B2174AB90]
Beyond 16S rRNA Community Profiling: Intra-Species Diversity in the Gut Microbiota.
Ellegaard K.M., Engel P., 2016. Frontiers In Microbiology, 7 p. 1475. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_D99EC9C05048]
Genome-wide screen identifies host colonization determinants in a bacterial gut symbiont.
Powell J.E., Leonard S.P., Kwong W.K., Engel P., Moran N.A., 2016. Proceedings of the National Academy of Sciences of the United States of America, 113 (48) pp. 13887-13892. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_3F8F84A638CB]
Metabolism of Toxic Sugars by Strains of the Bee Gut Symbiont Gilliamella apicola.
Zheng H., Nishida A., Kwong W.K., Koch H., Engel P., Steele M.I., Moran N.A., 2016. mBio, 7 (6) pp. e01326-16. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_D28023F436EB]
 
Probiotic Treatment with a Gut Symbiont Leads to Parasite Susceptibility in Honey Bees.
Schmidt K., Engel P., 2016. Trends in Parasitology, 32 (12) pp. 914-916.
[DOI][WoS][Pmid][serval:BIB_5C582A351110]
2015
Gut symbionts from distinct hosts exhibit genotoxic activity via divergent colibactin biosynthetic pathways.
Engel P., Vizcaino M.I., Crawford J.M., 2015. Applied and Environmental Microbiology, 81 (4) pp. 1502-1512.
[URN][DOI][WoS][Pmid][serval:BIB_721F6FBC81D9]
The Bacterium Frischella perrara Causes Scab Formation in the Gut of its Honeybee Host.
Engel P., Bartlett K.D., Moran N.A., 2015. Mbio, 6 (3) pp. e00193-e00115. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_C18AD485D3A4]
2014
 
Comparative metabolomics and structural characterizations illuminate colibactin pathway-dependent small molecules.
Vizcaino M.I., Engel P., Trautman E., Crawford J.M., 2014. Journal of the American Chemical Society, 136 (26) pp. 9244-9247. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_804E7482F5E2]
 
Genomics and host specialization of honey bee and bumble bee gut symbionts.
Kwong W.K., Engel P., Koch H., Moran N.A., 2014. Proceedings of the National Academy of Sciences of the United States of America, 111 (31) pp. 11509-11514. Peer-reviewed.
[DOI][WoS][Pmid][serval:BIB_157ECC13EB18]
Hidden diversity in honey bee gut symbionts detected by single-cell genomics.
Engel P., Stepanauskas R., Moran N.A., 2014. PLoS Genetics, 10 (9) pp. e1004596. Peer-reviewed.
[URN][DOI][WoS][Pmid][serval:BIB_F31F34036883]
2013
 
Disentangling associated genomes.
Sloan D.B., Bennett G.M., Engel P., Williams D., Ochman H., 2013. Methods in Enzymology, 531 pp. 445-464.
[DOI][WoS][Pmid][serval:BIB_C085BC0DAC3D]
 
Frischella perrara gen. nov., sp. nov., a gammaproteobacterium isolated from the gut of the honeybee, Apis mellifera.
Engel P., Kwong W.K., Moran N.A., 2013. International Journal of Systematic and Evolutionary Microbiology, 63 (Pt 10) pp. 3646-3651.
[DOI][WoS][Pmid][serval:BIB_863DC386628C]
 
Functional and evolutionary insights into the simple yet specific gut microbiota of the honey bee from metagenomic analysis.
Engel P., Moran N.A., 2013. Gut Microbes, 4 (1) pp. 60-65.
[DOI][Pmid][serval:BIB_0DC9282A9B1B]
 
Standard methods for research on Apis mellifera gut symbionts
Engel Philipp, James Rosalin R., Koga Ryuichi, Kwong Waldan K., McFrederick Quinn S., Moran Nancy A, 2013. Journal of Apicultural Research, 52 (4) pp. 1-23.
[DOI][WoS][serval:BIB_2EADC54D6FA7]
 
The gut microbiota of insects - diversity in structure and function.
Engel P., Moran N.A., 2013. FEMS Microbiology Reviews, 37 (5) pp. 699-735.
[DOI][WoS][Pmid][serval:BIB_7F3CA896D65A]
2012
 
Adenylylation control by intra- or intermolecular active-site obstruction in Fic proteins.
Engel P., Goepfert A., Stanger F.V., Harms A., Schmidt A., Schirmer T., Dehio C., 2012. Nature, 482 (7383) pp. 107-110.
[DOI][WoS][Pmid][serval:BIB_DF03176215B5]
 
Functional diversity within the simple gut microbiota of the honey bee.
Engel P., Martinson V.G., Moran N.A., 2012. Proceedings of the National Academy of Sciences of the United States of America, 109 (27) pp. 11002-11007.
[DOI][WoS][Pmid][serval:BIB_5706ED91147A]
2011
 
Parallel evolution of a type IV secretion system in radiating lineages of the host-restricted bacterial pathogen Bartonella.
Engel P., Salzburger W., Liesch M., Chang C.C., Maruyama S., Lanz C., Calteau A., Lajus A., Médigue C., Schuster S.C. et al., 2011. PLoS Genetics, 7 (2) pp. e1001296.
[DOI][WoS][Pmid][serval:BIB_E72C762B95AF]
2010
 
The BatR/BatS two-component regulatory system controls the adaptive response of Bartonella henselae during human endothelial cell infection.
Quebatte M., Dehio M., Tropel D., Basler A., Toller I., Raddatz G., Engel P., Huser S., Schein H., Lindroos H.L. et al., 2010. Journal of Bacteriology, 192 (13) pp. 3352-3367.
[DOI][WoS][Pmid][serval:BIB_D4F71DE2BDEA]
 
The Trw type IV secretion system of Bartonella mediates host-specific adhesion to erythrocytes.
Vayssier-Taussat M., Le Rhun D., Deng H.K., Biville F., Cescau S., Danchin A., Marignac G., Lenaour E., Boulouis H.J., Mavris M. et al., 2010. PLoS Pathogens, 6 (6) pp. e1000946.
[DOI][WoS][Pmid][serval:BIB_B80490D5CFE1]
2009
 
Genomics of host-restricted pathogens of the genus bartonella.
Engel P., Dehio C., 2009. Genome Dynamics, 6 pp. 158-169.
[DOI][WoS][Pmid][serval:BIB_115025467D41]
2007
 
Genomic analysis of Bartonella identifies type IV secretion systems as host adaptability factors.
Saenz H.L., Engel P., Stoeckli M.C., Lanz C., Raddatz G., Vayssier-Taussat M., Birtles R., Schuster S.C., Dehio C., 2007. Nature Genetics, 39 (12) pp. 1469-1476.
[DOI][WoS][Pmid][serval:BIB_C9E62C0D8CD1]
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