David Dylus

Publications | Mémoires et thèses

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8 publications

2019 | 2018 | 2017 | 2016 |
 
OMA standalone: orthology inference among public and custom genomes and transcriptomes.
Altenhoff A.M., Levy J., Zarowiecki M., Tomiczek B., Warwick Vesztrocy A., Dalquen D.A., Müller S., Telford M.J., Glover N.M., Dylus D. et al., 2019/07. Genome research, 29 (7) pp. 1152-1163. Peer-reviewed.
RecPhyloXML: a format for reconciled gene trees.
Duchemin W., Gence G., Arigon Chifolleau A.M., Arvestad L., Bansal M.S., Berry V., Boussau B., Chevenet F., Comte N., Davín A.A. et al., 2018/11/01. Bioinformatics, 34 (21) pp. 3646-3652. Peer-reviewed.
The OMA orthology database in 2018: retrieving evolutionary relationships among all domains of life through richer web and programmatic interfaces.
Altenhoff A.M., Glover N.M., Train C.M., Kaleb K., Warwick Vesztrocy A., Dylus D., de Farias T.M., Zile K., Stevenson C., Long J. et al., 2018/01/04. Nucleic acids research, 46 (D1) pp. D477-D485. Peer-reviewed.
Developmental transcriptomics of the brittle star Amphiura filiformis reveals gene regulatory network rewiring in echinoderm larval skeleton evolution.
Dylus D.V., Czarkwiani A., Blowes L.M., Elphick M.R., Oliveri P., 2018. Genome Biology, 19 (1) p. 26. Peer-reviewed.
 
Taxon sampling unequally affects individual nodes in a phylogenetic tree: consequences for model gene tree construction in SwissTree
Boeckmann Brigitte, Dylus David, Moretti Sebastien, Altenhoff Adrian, Train Clement-Marie, Kriventseva Evgenia, Bougueleret Lydie, Xenarios Ioannis, Privman Eyal, Gabaldon Toni et al., 2017/09/05. biorxiv.
Phylo.io: Interactive Viewing and Comparison of Large Phylogenetic Trees on the Web.
Robinson O., Dylus D., Dessimoz C., 2016/08. Molecular biology and evolution, 33 (8) pp. 2163-2166. Peer-reviewed.
 
Large-scale gene expression study in the ophiuroid Amphiura filiformis provides insights into evolution of gene regulatory networks.
Dylus D.V., Czarkwiani A., Stångberg J., Ortega-Martinez O., Dupont S., Oliveri P., 2016. Evodevo, 7 p. 2. Peer-reviewed.
 
Skeletal regeneration in the brittle star Amphiura filiformis.
Czarkwiani A., Ferrario C., Dylus D.V., Sugni M., Oliveri P., 2016. Frontiers in Zoology, 13 p. 18. Peer-reviewed.
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