Andrzej Stasiak

Publications | Mémoires et thèses

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226 publications

2019 | 2018 | 2017 | 2016 | 2015 | 2014 | 2013 | 2012 | 2011 | 2010 | 2009 | 2008 | 2007 | 2006 | 2005 | 2004 | 2003 | 2002 | 2001 | 2000 | 1999 | 1998 | 1997 | 1996 | 1995 | 1994 | 1993 | 1992 | 1991 | 1990 | 1989 | 1988 | ...
Are TADs supercoiled?
Racko D., Benedetti F., Dorier J., Stasiak A., 2019/01/25. Nucleic acids research, 47 (2) pp. 521-532. Peer-reviewed.
KnotProt 2.0: a database of proteins with knots and other entangled structures.
Dabrowski-Tumanski P., Rubach P., Goundaroulis D., Dorier J., Sulkowski P., Millett K.C., Rawdon E.J., Stasiak A., Sulkowska J.I., 2019/01/08. Nucleic Acids Research, 47 (D1) pp. D367-D375. Peer-reviewed.
 
Closing the DNA replication cycle: from simple circular molecules to supercoiled and knotted DNA catenanes.
Schvartzman J.B., Hernández P., Krimer D.B., Dorier J., Stasiak A., 2019. Nucleic acids research, 47 (14) pp. 7182–7198. Peer-reviewed.
Chromatin Loop Extrusion and Chromatin Unknotting.
Racko D., Benedetti F., Goundaroulis D., Stasiak A., 2018/10/11. Polymers, 10 (10) p. 1126. Peer-reviewed.
Two convergent pathways of DNA knotting in replicating DNA molecules as revealed by θ-curve analysis.
O'Donnol D., Stasiak A., Buck D., 2018/09/28. Nucleic acids research, 46 (17) pp. 9181-9188. Peer-reviewed.
Transcription-induced supercoiling as the driving force of chromatin loop extrusion during formation of TADs in interphase chromosomes.
Racko D., Benedetti F., Dorier J., Stasiak A., 2018/02/28. Nucleic acids research, 46 (4) pp. 1648-1660. Peer-reviewed.
 
Knoto-ID: a tool to study the entanglement of open protein chains using the concept of knotoids.
Dorier J., Goundaroulis D., Benedetti F., Stasiak A., 2018. Bioinformatics, 34 (19) pp. 3402-3404. Peer-reviewed.
 
Periodic Motion of Sedimenting Flexible Knots
Gruziel M., Thyagarajan K., Dietler G., Stasiak A., Ekiel-Jeżewska M.L., Szymczak P., 2018. Physical Review Letters, 121 (12) p. 127801. Peer-reviewed.
 
Protein Knotting by Active Threading of Nascent Polypeptide Chain Exiting from the Ribosome Exit Channel.
Dabrowski-Tumanski P., Piejko M., Niewieczerzal S., Stasiak A., Sulkowska J.I., 2018. The journal of Physical Chemistry. B, 122 (49) pp. 11616-11625. Peer-reviewed.
Studies of global and local entanglements of individual protein chains using the concept of knotoids.
Goundaroulis D., Dorier J., Benedetti F., Stasiak A., 2017/07/24. Scientific reports, 7 (1) p. 6309. Peer-reviewed.
 
Molecular Dynamics Simulation of Supercoiled, Knotted, and Catenated DNA Molecules, Including Modeling of Action of DNA Gyrase.
Racko D., Benedetti F., Dorier J., Burnier Y., Stasiak A., 2017. Methods in Molecular Biology, 1624 pp. 339-372. Peer-reviewed.
Topological Models for Open-Knotted Protein Chains Using the Concepts of Knotoids and Bonded Knotoids
Goundaroulis D., Gügümcü N., Lambropoulou S., Dorier J., Stasiak A., Kauffman L., 2017. Polymers, 9 (9) p. 444. Peer-reviewed.
Transcription-induced supercoiling explains formation of self-interacting chromatin domains in S. pombe.
Benedetti F., Racko D., Dorier J., Burnier Y., Stasiak A., 2017. Nucleic Acids Research, 45 (17) pp. 9850-9859. Peer-reviewed.
 
Model of DNA topology simplification has come full (supercoiled) circle after two decades of research: Comment on "Disentangling DNA molecules" by Alexander Vologodskii.
Stasiak A., 2016/06/17. Physics of life reviews, 18 pp. 154-157.
How topoisomerase IV can efficiently unknot and decatenate negatively supercoiled DNA molecules without causing their torsional relaxation.
Rawdon E.J., Dorier J., Racko D., Millett K.C., Stasiak A., 2016/06/02. Nucleic acids research, 44 (10) pp. 4528-4538. Peer-reviewed.
In Search of Functional Advantages of Knots in Proteins.
Dabrowski-Tumanski P., Stasiak A., Sulkowska J.I., 2016. PLoS One, 11 (11) pp. e0165986. Peer-reviewed.
Effects of physiological self-crowding of DNA on shape and biological properties of DNA molecules with various levels of supercoiling.
Benedetti F., Japaridze A., Dorier J., Racko D., Kwapich R., Burnier Y., Dietler G., Stasiak A., 2015. Nucleic Acids Research, 43 (4) pp. 2390-2399.
Electrophoretic mobility of supercoiled, catenated and knotted DNA molecules.
Cebrián J., Kadomatsu-Hermosa M.J., Castán A., Martínez V., Parra C., Fernández-Nestosa M.J., Schaerer C., Martínez-Robles M.L., Hernández P., Krimer D.B. et al., 2015. Nucleic Acids Research, 43 (4) pp. e24.
Generation of supercoils in nicked and gapped DNA drives DNA unknotting and postreplicative decatenation.
Racko D., Benedetti F., Dorier J., Burnier Y., Stasiak A., 2015. Nucleic Acids Research, 43 (15) pp. 7229-7236.
KnotProt: a database of proteins with knots and slipknots.
Jamroz M., Niemyska W., Rawdon E.J., Stasiak A., Millett K.C., Sulkowski P., Sulkowska J.I., 2015. Nucleic Acids Research, 43 (Database issue) pp. D306-D314.
 
Presence control of DNA repair controllers.
Stasiak A., 2015. Cell Cycle, 14 (14) p. 2199. Peer-reviewed.
Subknots in ideal knots, random knots, and knotted proteins.
Rawdon E.J., Millett K.C., Stasiak A., 2015. Scientific Reports, 5 p. 8928.
Effects of supercoiling on enhancer-promoter contacts.
Benedetti F., Dorier J., Stasiak A., 2014. Nucleic Acids Research, 42 (16) pp. 10425-10432.
Models that include supercoiling of topological domains reproduce several known features of interphase chromosomes.
Benedetti F., Dorier J., Burnier Y., Stasiak A., 2014. Nucleic Acids Research, 42 (5) pp. 2848-2855.
 
Identifying knots in proteins.
Millett K.C., Rawdon E.J., Stasiak A., Sułkowska J.I., 2013. Biochemical Society Transactions, 41 (2) pp. 533-537.
 
Knot localization in proteins.
Rawdon E.J., Millett K.C., Sulkowska J.I., Stasiak A., 2013. Biochemical Society Transactions, 41 (2) pp. 538-541.
Modelling of crowded polymers elucidate effects of double-strand breaks in topological domains of bacterial chromosomes.
Dorier J., Stasiak A., 2013. Nucleic Acids Research, 41 (14) pp. 6808-6815.
Sedimentation of macroscopic rigid knots and its relation to gel electrophoretic mobility of DNA knots.
Weber C., Carlen M., Dietler G., Rawdon E.J., Stasiak A., 2013. Scientific Reports, 3 p. 1091.
 
Topological aspects of DNA function and protein folding.
Stasiak A., Bates A.D., Buck D.E., Harris S.A., Sumners de W, 2013. Biochemical Society Transactions, 41 (2) pp. 491-493.
 
Conservation of complex knotting and slipknotting patterns in proteins.
Sulkowska J.I., Rawdon E.J., Millett K.C., Onuchic J.N., Stasiak A., 2012. Proceedings of the National Academy of Sciences of the United States of America, 109 (26) pp. E1715-E1723.
Effective stiffening of DNA due to nematic ordering causes DNA molecules packed in phage capsids to preferentially form torus knots.
Reith D., Cifra P., Stasiak A., Virnau P., 2012. Nucleic Acids Research, 40 (11) pp. 5129-5137.
Probing Rad51-DNA interactions by changing DNA twist.
Atwell S., Disseau L., Stasiak A.Z., Stasiak A., Renodon-Cornière A., Takahashi M., Viovy J.L., Cappello G., 2012. Nucleic Acids Research, 40 (22) pp. 11769-11776.
 
Saccharomyces cerevisiae Dmc1 and Rad51 Proteins Preferentially Function with Tid1 and Rad54 Proteins, Respectively, to Promote DNA Strand Invasion during Genetic Recombination.
Nimonkar A.V., Dombrowski C.C., Siino J.S., Stasiak A.Z., Stasiak A., Kowalczykowski S.C., 2012. Journal of Biological Chemistry, 287 (34) pp. 28727-28737.
Cooperative kinking at distant sites in mechanically stressed DNA.
Lionberger T.A., Demurtas D., Witz G., Dorier J., Lillian T., Meyhöfer E., Stasiak A., 2011. Nucleic Acids Research, 39 (22) pp. 9820-9832.
 
Cumulative Shapes of Knotted Polymers
Rawdon Eric J., Millett Kenneth C., Tran Vy T., Stasiak Andrzej, 2011. Progress of Theoretical Physics Supplement, 191 pp. 165-171. Peer-reviewed.
 
DNA knots and DNA supercoiling.
Witz G., Dietler G., Stasiak A., 2011. Cell Cycle, 10 (9) pp. 1339 - 1340.
 
Nullification of small knots
Ernst Claus, Montemayor Anthony, Stasiak Andrzej, 2011. Progress of Theoretical Physics Supplement, 191 pp. 66-77. Peer-reviewed.
 
Role of topological exclusion in formation and organization of chromosomal territories
Dorier Julien, Stasiak Andrzej, 2011. Progress of Theoretical Physics Supplement, 191 pp. 46-54. Peer-reviewed.
 
Tightening of DNA knots by supercoiling facilitates their unknotting by type II DNA topoisomerases.
Witz G., Dietler G., Stasiak A., 2011. Proceedings of the National Academy of Sciences of the United States of America, 108 (9) pp. 3608-3611. Peer-reviewed.
A histone-fold complex and FANCM form a conserved DNA-remodeling complex to maintain genome stability.
Yan Z., Delannoy M., Ling C., Daee D., Osman F., Muniandy P.A., Shen X., Oostra A.B., Du H., Steltenpool J. et al., 2010. Molecular Cell, 37 (6) pp. 865-878. Peer-reviewed.
Cooperation of breast cancer proteins PALB2 and piccolo BRCA2 in stimulating homologous recombination.
Buisson R., Dion-Côté A.M., Coulombe Y., Launay H., Cai H., Stasiak A.Z., Stasiak A., Xia B., Masson J.Y., 2010. Nature Structural and Molecular Biology, 17 (10) pp. 1247-1254. Peer-reviewed.
Design of potent inhibitors of human RAD51 recombinase based on BRC motifs of BRCA2 protein: modeling and experimental validation of a chimera peptide.
Nomme J., Renodon-Cornière A., Asanomi Y., Sakaguchi K., Stasiak A.Z., Stasiak A., Norden B., Tran V., Takahashi M., 2010. Journal of Medicinal Chemistry, 53 (15) pp. 5782-5791.
DNA supercoiling and its role in DNA decatenation and unknotting.
Witz G., Stasiak A., 2010. Nucleic Acids Research, 38 (7) pp. 2119-2133. Peer-reviewed.
 
ParA2, a Vibrio cholerae chromosome partitioning protein, forms left-handed helical filaments on DNA.
Hui M.P., Galkin V.E., Yu X., Stasiak A.Z., Stasiak A., Waldor M.K., Egelman E.H., 2010. Proceedings of the National Academy of Sciences of the United States of America, 107 (10) pp. 4590-4595.
 
Symmetry-breaking in cumulative measures of shapes of polymer models.
Millett K.C., Rawdon E.J., Tran T.V., Stasiak A., 2010. Journal of Chemical Physics, 133 (15) p. 154113.
The role of transcription factories-mediated interchromosomal contacts in the organization of nuclear architecture.
Dorier J., Stasiak A., 2010. Nucleic Acids Research, 38 (21) pp. 7410-7421. Peer-reviewed.
A partial ordering of knots and links through diagrammatic unknotting
Diao Y., Ernst C., Stasiak A., 2009. Journal of Knot Theory and its Ramifications, 18 (4) pp. 505-522. Peer-reviewed.
Bending modes of DNA directly addressed by cryo-electron microscopy of DNA minicircles.
Demurtas D., Amzallag A., Rawdon E.J., Maddocks J.H., Dubochet J., Stasiak A., 2009. Nucleic Acids Research, 37 (9) pp. 2882-2893. Peer-reviewed.
 
DNA-DNA interactions in bacteriophage capsids are responsible for the observed DNA knotting.
Marenduzzo D., Orlandini E., Stasiak A., Sumners de W, Tubiana L., Micheletti C., 2009. Proceedings of the National Academy of Sciences of the United States of America, 106 (52) pp. 22269-22274. Peer-reviewed.
 
Effect of knotting on polymer shapes and their enveloping ellipsoids.
Millett K.C., Plunkett P., Piatek M., Rawdon E.J., Stasiak A., 2009. Journal of Chemical Physics, 130 (16) p. 165104. Peer-reviewed.
 
Inhibitory effect of DNA supercoiling on DNA knotting
Dorier J., Burnier Y., Stasiak A., 2009. Bussei Kenkyu, 92 (1) pp. 84-88. Peer-reviewed.
Interplay of DNA supercoiling and catenation during the segregation of sister duplexes.
Martínez-Robles M.L., Witz G., Hernández P., Schvartzman J.B., Stasiak A., Krimer D.B., 2009. Nucleic Acids Research, 37 (15) pp. 5126-5137. Peer-reviewed.
 
MRE11-RAD50-NBS1 is a critical regulator of FANCD2 stability and function during DNA double-strand break repair.
Roques C., Coulombe Y., Delannoy M., Vignard J., Grossi S., Brodeur I., Rodrigue A., Gautier J., Stasiak A.Z., Stasiak A. et al., 2009. The EMBO journal, 28 (16) pp. 2400-2413. Peer-reviewed.
Shapes of knotted cyclic polymers
Millett K.C., Plunkett P., Piatek M., Rawdon E.J., Stasiak A., 2009. Bussei Kenkyu, 92 (1) pp. 32-37. Peer-reviewed.
Topological origins of chromosomal territories.
Dorier J., Stasiak A., 2009. Nucleic Acids Research, 37 (19) pp. 6316-6322. Peer-reviewed.
DNA supercoiling inhibits DNA knotting.
Burnier Y., Dorier J., Stasiak A., 2008/09. Nucleic Acids Research, 36 (15) pp. 4956-4963. Peer-reviewed.
Functional and structural basis for a bacteriophage homolog of human RAD52.
Ploquin M., Bransi A., Paquet E.R., Stasiak A.Z., Stasiak A., Yu X., Cieslinska A.M., Egelman E.H., Moineau S., Masson J.Y., 2008/08. Current Biology, 18 (15) pp. 1142-1146. Peer-reviewed.
3D visualization software to analyze topological outcomes of topoisomerase reactions.
Darcy I.K., Scharein R.G., Stasiak A., 2008/06. Nucleic Acids Research, 36 (11) pp. 3515-3521. Peer-reviewed.
 
Scaling behavior and equilibrium lengths of knotted polymers
Rawdon E., Dobay A., Kern J.C., Millett K.C., Piatek M., Plunkett P., Stasiak A., 2008/06. Macromolecules, 41 (12) pp. 4444-4451. Peer-reviewed.
 
A glycine-arginine domain in control of the human MRE11 DNA repair protein.
Déry U., Coulombe Y., Rodrigue A., Stasiak A., Richard S., Masson J.Y., 2008/05. Molecular and Cellular Biology, 28 (9) pp. 3058-3069. Peer-reviewed.
 
Effect of Knotting on the Shape of Polymers
Rawdon E. J., Kern J. C., Piatek M., Plunkett P., Stasiak A., Millett K. C., 2008. Macromolecules, 41 (21) pp. 8281-8287. Peer-reviewed.
 
RecA-DNA complexes
Stasiak A.Z., Stasiak A., 2008. CHEMTRACTS-Biochemistry and Molecular Biology, 21 pp. 399-405.
 
The Fanconi anemia protein FANCM can promote branch migration of Holliday junctions and replication forks.
Gari K., Décaillet C., Stasiak A.Z., Stasiak A., Constantinou A., 2008/01. Molecular Cell, 29 (1) pp. 141-148. Peer-reviewed.
 
Structural motifs of biomolecules.
Banavar J.R., Hoang T.X., Maddocks J.H., Maritan A., Poletto C., Stasiak A., Trovato A., 2007/10. Proceedings of the National Academy of Sciences of the United States of America, 104 (44) pp. 17283-17286. Peer-reviewed.
 
Linear behaviour of the writhe versus the number crossings in rational knots and links
Cerf C., Stasiak A., 2007. pp. 111-125 dans Monastyrsky M. I. (eds.) Topology in Molecular Biology chap. 6, Springer.
Local selection rules that can determine specific pathways of DNA unknotting by type II DNA topoisomerases.
Burnier Y., Weber C., Flammini A., Stasiak A., 2007. Nucleic Acids Research, 35 (15) pp. 5223-5231. Peer-reviewed.
 
Natural classification of knots
Flammini A., Stasiak A, 2007., Proceedings of the International Workshop on Knot Theory for Scientific Objets held in Osaka(Japan), March 8-10, 2006 pp. 293-306 dans Kawauchi A. (eds.) Knot theory for scientific objects, OCAMI Studies 1, Osaka Municipal Universities Press.
 
Natural classification of knots
Flammini A., Stasiak A., 2007. Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences, 463 (2078) pp. 569-582. Peer-reviewed.
Self-avoiding random walks and Olbers' paradox
Diao Y., Stasiak A., 2007. International Journal of Contemporary Mathematical Sciences, 2 (9) pp. 445-449. Peer-reviewed.
Stimulation of fission yeast and mouse Hop2-Mnd1 of the Dmc1 and Rad51 recombinases.
Ploquin M., Petukhova G.V., Morneau D., Déry U., Bransi A., Stasiak A., Camerini-Otero R.D., Masson J.Y., 2007. Nucleic Acids Research, 35 (8) pp. 2719-2733. Peer-reviewed.
 
Topological locking restrains replication fork reversal.
Fierro-Fernández M., Hernández P., Krimer D.B., Stasiak A., Schvartzman J.B., 2007/01. Proceedings of the National Academy of Sciences of the United States of America, 104 (5) pp. 1500-1505. Peer-reviewed.
 
Total curvature and total torsion of knotted polymers
Plunkett P., Piatek M., Dobay A., Kern J. C., Millett K. C., Stasiak A., Rawdon E. J., 2007. Macromolecules, 40 (10) pp. 3860-3867. Peer-reviewed.
 
Nucleic acid-binding properties of the RRM-containing protein RDM1.
Hamimes S., Bourgeon D., Stasiak A.Z., Stasiak A., Van Dyck E., 2006/05. Biochemical and Biophysical Research Communications, 344 (1) pp. 87-94. Peer-reviewed.
 
Numerical simulation of gel electrophoresis of DNA knots in weak and strong electric fields.
Weber C., Stasiak A., De Los Rios P., Dietler G., 2006/05. Biophysical Journal, 90 (9) pp. 3100-3105. Peer-reviewed.
 
Measuring limits of telomere movement on nuclear envelope.
Rosa A., Maddocks J.H., Neumann F.R., Gasser S.M., Stasiak A., 2006/02. Biophysical Journal, 90 (3) pp. L24-L26. Peer-reviewed.
3D reconstruction and comparison of shapes of DNA minicircles observed by cryo-electron microscopy.
Amzallag A., Vaillant C., Jacob M., Unser M., Bednar J., Kahn J.D., Dubochet J., Stasiak A., Maddocks J.H., 2006. Nucleic Acids Research, 34 (18) pp. e125. Peer-reviewed.
 
Long time behaviour of diffusing particles in constrained geometries; application to chromatin motion
Rosa A., Neumann F.R., Gasser S.M., Stasiak A., 2006. Journal of Physics: Condensed Matter, 18 (14) pp. S235-S243. Peer-reviewed.
 
Simulations of electrophoretic collisions of DNA knots with gel obstacles
Weber C., De Los Rios P., Dietler G., Stasiak A., 2006. Journal of Physics: Condensed Matter, 18 (14) pp. S161-S171. Peer-reviewed.
 
Thermodynamics, kinetics and mechanics of biopolymers
Bhattachrjeee S.M., Micheletti C., Stasiak A., 2006. Journal of Physics: Condensed Matter, 18 pp. N/A. Peer-reviewed.
 
Activation of human meiosis-specific recombinase Dmc1 by Ca2+.
Bugreev D.V., Golub E.I., Stasiak A.Z., Stasiak A., Mazin A.V., 2005. Journal of Biological Chemistry, 280 (29) pp. 26886-26895. Peer-reviewed.
 
Fission yeast rad51 and dmc1, two efficient DNA recombinases forming helical nucleoprotein filaments.
Sauvageau S., Stasiak A.Z., Banville I., Ploquin M., Stasiak A., Masson J.Y., 2005. Molecular and Cellular Biology, 25 (11) pp. 4377-4387. Peer-reviewed.
 
Linear random knots and their scaling behavior
Millet K., Dobay A., Stasiak A., 2005. Macromolecules, 38 (2) pp. 601-606. Peer-reviewed.
 
RDM1, a novel RNA recognition motif (RRM)-containing protein involved in the cell response to cisplatin in vertebrates.
Hamimes S., Arakawa H., Stasiak A.Z., Kierzek A.M., Hirano S., Yang Y.G., Takata M., Stasiak A., Buerstedde J.M., Van Dyck E., 2005. Journal of Biological Chemistry, 280 (10) pp. 9225-9235. Peer-reviewed.
 
Scaling of the average crossing number in equilateral random walks, knots and proteins
Dobay A., Diao Y., Dubochet J., Stasiak A., 2005., Conference on Knots Random Walks and Biomolecules. Les Diablerets, Switzerland, Jul 14-17, 2003 pp. 219-231 dans Physical and Numerical Models in Knot Theory, Series on Knots and Everything.
 
The average inter-crossing number of equilateral random walks and polygons
Diao Y., Dobay A., Stasiak A., 2005. Journal of Physics A: Mathematical and General, 38 (35) pp. 7601-7616.
 
Viral transport of DNA damage that mimics a stalled replication fork.
Jurvansuu J., Raj K., Stasiak A., Beard P., 2005. Journal of Virology, 79 (1) pp. 569-580. Peer-reviewed.
 
A topological view of the replicon.
Schvartzman J.B., Stasiak A., 2004. EMBO Reports, 5 (3) pp. 256-261. Peer-reviewed.
 
Another strand to the DNA story
Stasiak A., 2004. EMBO Reports, 5 (1) p. 21.
 
Conformational changes modulate the activity of human RAD51 protein.
Liu Y., Stasiak A.Z., Masson J.Y., McIlwraith M.J., Stasiak A., West S.C., 2004. Journal of Molecular Biology, 337 (4) pp. 817-827. Peer-reviewed.
 
DNA circles
Stasiak A., 2004., 1er Séminaire Transalpin de Physique Les Diablerets - Suisse - 2003 pp. 13-51 dans De Los Rios P., Dietler G., Fourcade B., Peroni C. (eds.) Living matter: a new challenge to physicists ?, Frontier Group.
 
Eight controversies
Stasiak A., 2004. EMBO Reports, 5 (3) p. 239.
 
Explaining explanations
Stasiak A., 2004. EMBO reports, 5 (9) p. 854.
 
Remorins form a novel family of coiled coil-forming oligomeric and filamentous proteins associated with apical, vascular and embryonic tissues in plants.
Bariola P.A., Retelska D., Stasiak A., Kammerer R.A., Fleming A., Hijri M., Frank S., Farmer E.E., 2004. Plant Molecular Biology, 55 (4) pp. 579-594.
 
Simulations of action of DNA topoisomerases to investigate boundaries and shapes of spaces of knots.
Flammini A., Maritan A., Stasiak A., 2004. Biophysical Journal, 87 (5) pp. 2968-2975. Peer-reviewed.
 
Scaling behavior of random knots.
Dobay A., Dubochet J., Millett K., Sottas P.E., Stasiak A., 2003/05. Proceedings of the National Academy of Sciences of the United States of America, 100 (10) pp. 5611-5615.
 
A knotty story.
Stasiak A., 2003. Nature, 421 (6922) p. 479. Peer-reviewed.
 
DNA's golden jubilee.
Stasiak A., 2003. EMBO reports, 4 (11) pp. 1025-1026.
 
Life cycle of a biologist.
Stasiak A., 2003. EMBO reports, 4 (5) p. 457.
 
Linear relations between writhe and minimal crossing number in Conway families of ideal knots and links
Cerf C., Stasiak A., 2003. New Journal of Physics, 5 pp. 87.1-87.15. Peer-reviewed.
 
Myths in science.
Stasiak A, 2003. EMBO reports, 4 (3) p. 236.
 
The average crossing number of equilateral random polygons.
Diao Y, Dobay A, Kusner RB, Millet K, Sottas PE, Stasiak A, 2003. Journal of Physics A. Mathematical and General, 36 (46) pp. 11561-11574. Peer-reviewed.
 
The first lady of DNA.
Stasiak A., 2003. EMBO reports, 4 (1) p. 14.
 
Topoisomerases
Stasiak A., 2003. dans Cooper D.N. (eds.) Encyclopedia of the human genome., Nature Publishing Group.
Bacillus subtilis bacteriophage SPP1 hexameric DNA helicase, G40P, interacts with forked DNA.
Ayora S., Weise F., Mesa P., Stasiak A., Alonso J.C., 2002/06. Nucleic Acids Research, 30 (11) pp. 2280-2289.
 
Construction and electrophoretic migration of single-stranded DNA knots and catenanes.
Bucka A., Stasiak A., 2002/03. Nucleic Acids Research, 30 (6) pp. e24.
Supercoiling, knotting and replication fork reversal in partially replicated plasmids.
Olavarrieta L., Martínez-Robles M.L., Sogo J.M., Stasiak A., Hernández P., Krimer D.B., Schvartzman J.B., 2002/02. Nucleic Acids Research, 30 (3) pp. 656-666.
 
Bringing an order into random knots.
Dobay A, Sottas P.E, Dubochet J, Stasiak A, 2002., AMS Special Session On Physical Knotting and Unknotting Las Vegas, Nevada April 21-22, 2001 pp. 115-124 dans Calvo J.A., Millet K.C., Rawdon E.J. (eds.) Physical knots: knotting, linking, and folding geometric objects in R3, Comtemporary Mathematics, American Mathematical Society.
 
FtsK Is a DNA motor protein that activates chromosome dimer resolution by switching the catalytic state of the XerC and XerD recombinases.
Aussel L., Barre F.X., Aroyo M., Stasiak A., Stasiak A.Z., Sherratt D., 2002/01. Cell, 108 (2) pp. 195-205.
 
Lucky experiment.
Stasiak A., 2002. EMBO Reports, 3 (10) pp. 925-926.
 
Lucky Jim.
Stasiak A., 2002. EMBO Reports, 3 (4) p. 305.
 
Nature's shape.
Stasiak A., 2002. EMBO Reports, 3 (9) p. 822.
 
Quantization of energy and writhe in self-repelling knots
Hoidn P., Kusner R.B., Stasiak A., 2002. New Journal of Physics, 4 pp. 20.1-20.11. Peer-reviewed.
 
Questions de topologie en biologie moléculaire
Weber C., 2002. pp. 342 - 347 dans Kantor J.-M., Azencott R., Sabbah C. (eds.) Où en sont les mathématiques ? chap. 15, Vuibert - Société Mathématique de France.
 
The rupture of knotted strings under tension
Dietler G., Pieranski P., Kasas S., Stasiak A., 2002., AMS Special Session On Physical Knotting and Unknotting Las Vegas, Nevada April 21-22, 2001 pp. 217-222 dans Calvo J.A., Millet K.C., Rawdon E.J. (eds.) Physical knots: knotting, linking, and folding geometric objects in R3, Comtemporary Mathematics, American Mathematical Society.
 
Identification and purification of two distinct complexes containing the five RAD51 paralogs.
Masson J.Y., Tarsounas M.C., Stasiak A.Z., Stasiak A., Shah R., McIlwraith M.J., Benson F.E., West S.C., 2001/12. Genes and Development, 15 (24) pp. 3296-3307.
RadA protein from Archaeoglobus fulgidus forms rings, nucleoprotein filaments and catalyses homologous recombination.
McIlwraith M.J., Hall D.R., Stasiak A.Z., Stasiak A., Wigley D.B., West S.C., 2001/11. Nucleic Acids Research, 29 (22) pp. 4509-4517.
 
Complex formation by the human RAD51C and XRCC3 recombination repair proteins.
Masson J.Y., Stasiak A.Z., Stasiak A., Benson F.E., West S.C., 2001/07. Proceedings of the National Academy of Sciences of the United States of America, 98 (15) pp. 8440-8446.
 
RecA-mediated strand exchange traverses substitutional heterologies more easily than deletions or insertions.
Bucka A., Stasiak A., 2001/06. Nucleic Acids Research, 29 (12) pp. 2464-2470.
 
Role of BRCA2 in control of the RAD51 recombination and DNA repair protein.
Davies A.A., Masson J.Y., McIlwraith M.J., Stasiak A.Z., Stasiak A., Venkitaraman A.R., West S.C., 2001/02. Molecular Cell, 7 (2) pp. 273-282.
 
Broken symmetry.
Stasiak A., 2001. EMBO reports, 2 (7) p. 562.
 
Crazy ideas ?
Stasiak A., 2001. EMBO reports, 2 (11) p. 978.
 
Gene therapy.
Stasiak A., 2001. EMBO reports, 2 (3) p. 180.
 
Gordian unknots
Pieranski P., Stasiak A., 2001. World of Science, 114 (2) pp. 6-9.
 
Lesion bypass by the Escherichia coli DNA polymerase V requires assembly of a RecA nucleoprotein filament.
Reuven N.B., Arad G., Stasiak A.Z., Stasiak A., Livneh Z., 2001. Journal of Biological Chemistry, 276 (8) pp. 5511-5517.
 
Localization of breakage points in knotted strings
Pieranski P., Kasas S., Dietler G., Dubochet J., Stasiak A., 2001. New Journal of Physics, 3 pp. 10.1-10.13. Peer-reviewed.
 
Pathological science.
Stasiak A., 2001. EMBO reports, 2 (9) p. 762.
 
Positive Torsional Strain Causes the Formation of a Four-Way Junction at Replication Forks.
Bucka A., Stasiak A., 2001. Chemtracts-Biochemistry and Molecular Biology, 14 pp. 166-173.
 
Predicting optimal lengths of random knots
Dobay A., Dubochet J., Sottas P.E., Stasiak A., 2001. Letters in Mathematical Physics, 55 (3) pp. 239-247. Peer-reviewed.
 
Questioning the utility of RNA-DNA chimera in gene repair.
Stasiak A., 2001. Science STKE, 0ctober pp. N/A. Peer-reviewed.
 
Rosalind Franklin.
Stasiak A., 2001. EMBO reports, 2 (3) p. 181.
 
Tight open knots.
Pieranski P., Przybyl S., Stasiak A., 2001. European Physical Journal E: Soft Matter, 6 (2) pp. 123-128.
 
Visualization of recombination intermediates produced by RAD52-mediated single-strand annealing.
Van Dyck E., Stasiak A.Z., Stasiak A., West S.C., 2001. EMBO Reports, 2 (10) pp. 905-909.
 
DNA topology: feeling the pulse of a topoisomerase.
Stasiak A., 2000/07. Current Biology, 10 (14) pp. R526-R528.
 
Mathematics. Best packing in proteins and DNA.
Stasiak A., Maddocks J.H., 2000/07. Nature, 406 (6793) pp. 251-253.
 
Tightness of random knotting.
Katritch V., Olson W.K., Vologodskii A., Dubochet J., Stasiak A., 2000/05. Physical Review. E, Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics, 61 (5 Pt B) pp. 5545-5549.
 
A topological invariant to predict the three-dimensional writhe of ideal configurations of knots and links.
Cerf C., Stasiak A., 2000/04. Proceedings of the National Academy of Sciences of the United States of America, 97 (8) pp. 3795-3798.
 
The human Rad52 protein exists as a heptameric ring.
Stasiak A.Z., Larquet E., Stasiak A., Müller S., Engel A., Van Dyck E., West S.C., Egelman E.H., 2000/03. Current Biology, 10 (6) pp. 337-340.
 
Quantum-like properties of knots and links.
Stasiak A., 2000., Proceedings of the International Conference on Knot Theory and Its Ramifications European Cultural Centre of Delphi, Greece, 7 - 15 August 1998 pp. 477-500 dans Gordon C. McA. , Jones V.F.R., Kauffman L.H., Lambropolou S., Przytycki J.H. (eds.) Knots in Hellas '98, Series on Knots and Everything, World Scientific.
 
Reconstitution of the strand invasion step of double-strand break repair using human Rad51 Rad52 and RPA proteins.
McIlwraith M.J., Van Dyck E., Masson J.Y., Stasiak A.Z., Stasiak A., West S.C., 2000. Journal of Molecular Biology, 304 (2) pp. 151-164.
 
Tailed Duplex DNA is the preferred substrate for Rad51 protein-mediated homologous pairing.
Bucka A., Stasiak A., 2000. Chemtracts - Biochemistry and Molecular Biology, 13 (6) pp. 415-423.
Brownian dynamics simulation of DNA condensation.
Sottas P.E., Larquet E., Stasiak A., Dubochet J., 1999/10. Biophysical Journal, 77 (4) pp. 1858-1870. Peer-reviewed.
 
Binding of double-strand breaks in DNA by human Rad52 protein.
Van Dyck E., Stasiak A.Z., Stasiak A., West S.C., 1999/09. Nature, 398 (6729) pp. 728-731.
 
Assembly of the Escherichia coli RuvABC resolvasome directs the orientation of holliday junction resolution.
van Gool A.J., Hajibagheri N.M., Stasiak A., West S.C., 1999/07. Genes and Development, 13 (14) pp. 1861-1870.
 
DNA: uncooked, al dente, or scotti?
Stasiak A., Dubochet J., Furrer P., Gonzalez O., Maddocks J., 1999/03. Science, 283 (5408) p. 1641. Peer-reviewed.
Escherichia coli RuvBL268S: a mutant RuvB protein that exhibits wild-type activities in vitro but confers a UV-sensitive ruv phenotype in vivo.
Mézard C., George H., Davies A.A., van Gool A.J., Zerbib D., Stasiak A., West S.C., 1999/03. Nucleic Acids Research, 27 (5) pp. 1275-1282.
 
Formation of knots in partially replicated DNA molecules.
Sogo J.M., Stasiak A., Martínez-Robles M.L., Krimer D.B., Hernández P., Schvartzman J.B., 1999. Journal of Molecular Biology, 286 (3) pp. 637-643.
 
Helicase-defective RuvB(D113E) promotes RuvAB-mediated branch migration in vitro.
George H., Mézard C., Stasiak A., West S.C., 1999. Journal of Molecular Biology, 293 (3) pp. 505-519.
 
Knotted fishing line, covalent bonds and breaking points
Stasiak A., Dobay A., Dubochet J., Dietler G., 1999. Science, 286 pp. 11a. Peer-reviewed.
 
Noeuds et ADN : les noeuds de l'ADN éclairent la réplication
Schvartzam J., Sogo J., Stasiak A., 1999. Pour la science, 259 pp. 25-26.
 
The Bacillus subtilis bacteriophage SPP1 G39P delivers and activates the G40P DNA helicase upon interacting with the G38P-bound replication origin.
Ayora S., Stasiak A., Alonso J.C., 1999. Journal of Molecular Biology, 288 (1) pp. 71-85.
 
The meiosis-specific recombinase hDmc1 forms ring structures and interacts with hRad51.
Masson J.Y., Davies A.A., Hajibagheri N., Van Dyck E., Benson F.E., Stasiak A.Z., Stasiak A., West S.C., 1999. Embo Journal, 18 (22) pp. 6552-6560.
Geometry and physics of catenanes applied to the study of DNA replication.
Laurie B., Katritch V., Sogo J., Koller T., Dubochet J., Stasiak A., 1998/06. Biophysical Journal, 74 (6) pp. 2815-2822. Peer-reviewed.
 
Sedimentation and electrophoretic migration of DNA knots and catenanes.
Vologodskii A.V., Crisona N.J., Laurie B., Pieranski P., Katritch V., Dubochet J., Stasiak A., 1998/04. Journal of Molecular Biology, 278 (1) pp. 1-3.
 
Homologous DNA pairing domain peptides of RecA protein: intrinsic propensity to form beta-structures and filaments.
Wang L., Voloshin O.N., Stasiak A., Camerini-Otero R.D., 1998. Journal of Molecular Biology, 277 (1) pp. 1-11.
 
Ideal Knots and their Relation to the Physics of Real Knots
Stasiak A., Dubochet J., Katritch V., Pieranski P., 1998. pp. 1-19 dans Stasiak A., Katritch V., Kauffman L.H. (eds.) Ideal knots chap. 1, World Scientific.
 
Visualisation of human rad52 protein and its complexes with hRad51 and DNA.
Van Dyck E., Hajibagheri N.M., Stasiak A., West S.C., 1998. Journal of Molecular Biology, 284 (4) pp. 1027-1038.
 
Biochemical properties of RuvBD113N: a mutation in helicase motif II of the RuvB hexamer affects DNA binding and ATPase activities.
Mézard C., Davies A.A., Stasiak A., West S.C., 1997/09. Journal of Molecular Biology, 271 (5) pp. 704-717.
 
Helical repeat of DNA in the region of homologous pairing.
Kiianitsa K., Stasiak A., 1997/07. Proceedings of the National Academy of Sciences of the United States of America, 94 (15) pp. 7837-7840.
 
Properties of ideal composite knots.
Katritch V., Olson W.K., Pieranski P., Dubochet J., Stasiak A., 1997/07. Nature, 388 (6638) pp. 148-151.
 
Sickle cell anemia research and a recombinant DNA technique.
Stasiak A., West S.C., Egelman E.H., 1997/07. Science, 277 (5325) pp. 460-462.
 
Opposite effect of counterions on the persistence length of nicked and non-nicked DNA.
Furrer P., Bednar J., Stasiak A.Z., Katritch V., Michoud D., Stasiak A., Dubochet J., 1997/03. Journal of Molecular Biology, 266 (4) pp. 711-721.
 
Noeuds idéaux et noeuds réels.
Stasiak A., 1997. Pour la Science., avril pp. 106-111.
 
Circular DNA.
Stasiak A, 1996. pp. 43-97 dans Semlyen J.A. (eds.) Large ring molecules, John Wiley and Sons Ltd.
 
Determination of the DNA helical repeat and of the structure of supercoiled DNA by cryo-electron microscopy.
Stasiak A., Bednar J., Furrer P., Katritch V., Dubochet J., 1996. pp. 117-138 dans Mesirov J.P., Schulten K., Sumners D.W. (eds.) Mathematical Approaches to Biomolecular Structure and Dynamics, Springer Verlag.
 
Elasticity of DNA as directly measured by cryo-electron microscopy
Stasiak A., Bednar J., Furrer P., Katritch V., Stasiak A.Z., Dubochet J., 1996., 9th Conversation in the Discipline Biomolecular Stereodynamics SUNY ALBANY, ALBANY, NY, JUN 20-24, 1995 pp. 259-266 dans Sarma R.H., Sarma M.H. (eds.) Biological structure and dynamics, Adenine Press.
 
Electrophoretic mobility of DNA knots.
Stasiak A., Katritch V., Bednar J., Michoud D., Dubochet J., 1996. Nature, 384 (6605) p. 122.
 
Geometry and physics of knots
Katritch V., Bedna J., Michoud D., Scharein G. S., Dubochet J., Stasiak A., 1996. Nature, 384 (6605) pp. 142-145. Peer-reviewed.
 
Getting down to the core of homologous recombination.
Stasiak A., 1996. Science, 272 (5263) pp. 828-829.
 
Determination of DNA persistence length by cryo-electron microscopy. Separation of the static and dynamic contributions to the apparent persistence length of DNA.
Bednar J., Furrer P., Katritch V., Stasiak A.Z., Dubochet J., Stasiak A., 1995/12. Journal of Molecular Biology, 254 (4) pp. 579-594.
 
The E.coli RuvAB proteins branch migrate Holliday junctions through heterologous DNA sequences in a reaction facilitated by SSB.
Parsons C.A., Stasiak A., West S.C., 1995/11. EMBO Journal, 14 (22) pp. 5736-5744.
 
Atomic force microscopy of nucleoprotein complexes.
Lyubchenko Y.L., Jacobs B.L., Lindsay S.M., Stasiak A., 1995/09. Scanning Microscopy, 9 (3) pp. 705-24; discussion 724-7.
 
Structure of a multisubunit complex that promotes DNA branch migration.
Parsons C.A., Stasiak A., Bennett R.J., West S.C., 1995/03. Nature, 374 (6520) pp. 375-378.
 
Purification and characterization of the human Rad51 protein, an analogue of E. coli RecA.
Benson F.E., Stasiak A., West S.C., 1994/12. EMBO Journal, 13 (23) pp. 5764-5771.
 
Effect of length and location of heterologous sequences on RecA-mediated strand exchange.
Morel P., Stasiak A., Ehrlich S.D., Cassuto E., 1994/08. Journal of Biological Chemistry, 269 (31) pp. 19830-19835.
 
The Escherichia coli RuvB branch migration protein forms double hexameric rings around DNA.
Stasiak A., Tsaneva I.R., West S.C., Benson C.J., Yu X., Egelman E.H., 1994/08. Proceedings of the National Academy of Sciences of the United States of America, 91 (16) pp. 7618-7622.
 
Determination of the DNA helical repeat by cryo-electron microscopy.
Dubochet J., Bednar J., Furrer P., Stasiak A.Z., Stasiak A., Bolshoy A.A., 1994/06. Nature Structural Biology, 1 (6) pp. 361-363.
 
Structure and function of RecA-DNA complexes.
Stasiak A., Egelman E.H., 1994/03. Experientia, 50 (3) pp. 192-203.
 
Cryo-electron microscopy of DNA
Dubochet J., Bedna J., Furrer P., Stasiak A., 1994. pp. 41-55 dans Eckstein F., Lilley D.M.J. (eds.) Nucleic Acids and Molecular Biology, Springer Verlag.
 
Structure of supercoiled DNA changes with increasing counterions concentrations - cryoelectron microscopy studies and Monte-Carlo simulations
Dubochet J., Bednar J., Furrer P., Stasiak A., 1994., 8th Conversation in the Discipline Biomolecular Stereodynamics SUNY ALBANY, ALBANY, NY, JUN 22-26, 1993 pp. 149-156 dans Sarma M.H., Sarma R.H. (eds.) Structural biology : the state of the art, Adenine Press.
 
The twist, writhe and overall shape of supercoiled DNA change during counterion-induced transition from a loosely to a tightly interwound superhelix. Possible implications for DNA structure in vivo.
Bednar J., Furrer P., Stasiak A., Dubochet J., Egelman E.H., Bates A.D., 1994/01. Journal of Molecular Biology, 235 (3) pp. 825-847.
 
Electron microscopy of RecA-DNA complexes: Two different states, their functional significance and relation to the solved crystal structure
Egelman E.H., Stasiak A., 1993. Micron, 24 (3) pp. 309-324. Peer-reviewed.
 
Three-stranded DNA structure; is this the secret of DNA homologous recognition?
Stasiak A., 1992/11. Molecular Microbiology, 6 (22) pp. 3267-3276.
 
The apical localization of transcribing RNA polymerases on supercoiled DNA prevents their rotation around the template.
ten Heggeler-Bordier B., Wahli W., Adrian M., Stasiak A., Dubochet J., 1992/02. EMBO Journal, 11 (2) pp. 667-672.
 
Cryoelectron microscopy of DNA molecules in solution.
Dubochet J., Adrian M., Dustin I., Furrer P., Stasiak A., 1992. Methods in Enzymology, 211 pp. 507-518.
 
Seeing DNA in action
Dubochet J., Adrian M., Bednar J., Stasiak A., 1992., 10th European Congress on Electron Microscopy, held in Granada, Spain, 7-11 September 1992 pp. 5-8 dans Megias L., Rodrigez-Garcia M.I., Rios A., Arias J.M. (eds.) Electron Microscopy 92 ; Vol. 3 ; Biological sciences, Universidad de Granada.
 
Towards the direct determination of the shape of DNA molecules in solution.
Furrer P., Bednar S., Adrian M., Stasiak A., Dubochet J., Revet B., Brahms S., Brahms G.J., 1992., 7th Conversation in the Discipline Biomolecular Sterodynamics SUNY ALBANY, ALBANY, NY, JUN 18-22, 1991 pp. 229-236 dans Sarma R.H., Sarma M.H. (eds.) Nucleic acids, Structure and Function, Adenine Press.
 
The ATPase activity of RecA is needed to push the DNA strand exchange through heterologous regions.
Rosselli W., Stasiak A., 1991/12. EMBO Journal, 10 (13) pp. 4391-4396.
 
RecA-mediated annealing of single-stranded DNA and its relation to the mechanism of homologous recombination.
Müller B., Stasiak A., 1991/09. Journal of Molecular Biology, 221 (1) pp. 131-145.
 
Spatial visualization of DNA in solution.
Dustin I., Furrer P., Stasiak A., Dubochet J., Langowski J., Egelman E., 1991/08. Journal of Structural Biology, 107 (1) pp. 15-21.
 
RecA-DNA helical filaments in genetic recombination.
Stasiak A.Z., Rosselli W., Stasiak A., 1991/03. Biochimie, 73 (2-3) pp. 199-208.
 
Direct visualization of supercoiled DNA molecules in solution.
Adrian M., ten Heggeler-Bordier B., Wahli W., Stasiak A.Z., Stasiak A., Dubochet J., 1990/12. EMBO Journal, 9 (13) pp. 4551-4554.
 
Energetics of RecA-mediated recombination reactions. Without ATP hydrolysis RecA can mediate polar strand exchange but is unable to recycle.
Rosselli W., Stasiak A., 1990/11. Journal of Molecular Biology, 216 (2) pp. 335-352.
 
Characterization of the DNA binding activity of stable RecA-DNA complexes. Interaction between the two DNA binding sites within RecA helical filaments.
Müller B., Koller T., Stasiak A., 1990/03. Journal of Molecular Biology, 212 (1) pp. 97-112.
 
DNA helical repeats.
Stasiak A., Weber C., Dubochet J., 1989/03. Nature, 338 (6210) p. 24. Peer-reviewed.
 
Scanning tunneling microscopy of uncoated recA-DNA complexes.
Amrein M., Dürr R., Stasiak A., Gross H., Travaglini G., 1989/03. Science, 243 (4899) pp. 1708-1711.
 
Structure of helical RecA-DNA complexes. III. The structural polarity of RecA filaments and functional polarity in the RecA-mediated strand exchange reaction.
Stasiak A., Egelman E.H., Howard-Flanders P., 1988/08. Journal of Molecular Biology, 202 (3) pp. 659-662.
 
Scanning tunneling microscopy of recA-DNA complexes coated with a conducting film.
Amrein M., Stasiak A., Gross H., Stoll E., Travaglini G., 1988/04. Science, 240 (4851) pp. 514-516.
 
Structure of helical RecA-DNA complexes. II. Local conformational changes visualized in bundles of RecA-ATP gamma S filaments.
Egelman E.H., Stasiak A., 1988/03. Journal of Molecular Biology, 200 (2) pp. 329-349.
 
Analysis of DNA knots and catenanes allows to deduce the mechanism of action of enzymes which cut and join DNA strands.
Stasiak A., Koller Th., 1988., NATO Advanced Research Workshop on New Theoretical Concepts in Physical Chemistry, Acquafredda di Maratea, Italy] pp. 207-219 dans Amann A., Cederbaum L.S., Gans W. (eds.) Fractals, quasicrystals, chaos, knots and algebraic quantum mechanics, NATO ASI series. Series C, Mathematical and physical sciences, Kluwer Academic Publishers.
 
Scanning and tunnelling microscopy of Rec-A-DNA complexes.
Travaglini G., Stoll G., Amrein M., Stasiak A., Gross H., 1988. Journal de Microscopie et de Spectroscopie Electroniques, 13 (4) pp. 257-264.
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