Claire Bertelli Lombardo

Publications | Mémoires et thèses

La recherche avancée est accessible via Serval

Les publications peuvent être gérées en accédant à Serval via MyUnil


42 publications

2019 | 2018 | 2017 | 2016 | 2015 | 2014 | 2013 | 2012 | 2011 | 2010 | 2009 | 2008 |
 
Whole-genome sequencing for rapid, reliable and routine investigation of Mycobacterium tuberculosis transmission in local communities.
Zakham F., Laurent S., Esteves Carreira A.L., Corbaz A., Bertelli C., Masserey E., Nicod L., Greub G., Jaton K., Mazza-Stalder J. et al., 2019/09. New microbes and new infections, 31 p. 100582. Peer-reviewed.
 
Phylogenomics reveal that Mycobacterium kansasii subtypes are species-level lineages. Description of Mycobacterium pseudokansasii sp. nov., Mycobacterium innocens sp. nov. and Mycobacterium attenuatum sp. nov.
Tagini F., Aeby S., Bertelli C., Droz S., Casanova C., Prod'hom G., Jaton K., Greub G., 2019/06. International journal of systematic and evolutionary microbiology, 69 (6) pp. 1696-1704. Peer-reviewed.
Molecular diagnosis and enrichment culture identified a septic pseudoarthrosis due to an infection with Erysipelatoclostridium ramosum.
Zakham F., Pillonel T., Brunel A.S., Zambelli P.Y., Greub G., Croxatto A., Bertelli C., 2019/04. International journal of infectious diseases, 81 pp. 167-169. Peer-reviewed.
Sequencing the Obligate Intracellular Rhabdochlamydia helvetica within Its Tick Host Ixodes ricinus to Investigate Their Symbiotic Relationship.
Pillonel T., Bertelli C., Aeby S., de Barsy M., Jacquier N., Kebbi-Beghdadi C., Mueller L., Vouga M., Greub G., 2019/04/01. Genome biology and evolution, 11 (4) pp. 1334-1344. Peer-reviewed.
 
Genomic characterisation of an international Pseudomonas aeruginosa reference panel indicates that the two major groups draw upon distinct mobile gene pools.
Freschi L., Bertelli C., Jeukens J., Moore M.P., Kukavica-Ibrulj I., Emond-Rheault J.G., Hamel J., Fothergill J.L., Tucker N.P., McClean S. et al., 2018/07/01. FEMS microbiology letters, 365 (14) p. 1. Peer-reviewed.
 
Improved genomic island predictions with IslandPath-DIMOB.
Bertelli C., Brinkman FSL, 2018/07/01. Bioinformatics, 34 (13) pp. 2161-2167. Peer-reviewed.
 
Microbial genomic island discovery, visualization and analysis.
Bertelli C., Tilley K.E., Brinkman FSL, 2018/06/03. Briefings in bioinformatics. Peer-reviewed.
 
Genome sequencing and functional characterization of the non-pathogenic Klebsiella pneumoniae KpGe bacteria.
Lima W.C., Pillonel T., Bertelli C., Ifrid E., Greub G., Cosson P., 2018/05. Microbes and infection, 20 (5) pp. 293-301. Peer-reviewed.
 
Resistome Analysis of a Carbapenemase (OXA-48)-Producing and Colistin-Resistant Klebsiella pneumoniae Strain.
Pillonel T., Nordmann P., Bertelli C., Prod' Hom G., Poirel L., Greub G., 2018/05. Antimicrobial agents and chemotherapy, 62 (5) pp. e00076-18 . Peer-reviewed.
Distinct Genomic Features Characterize Two Clades of <i>Corynebacterium diphtheriae</i>: Proposal of <i>Corynebacterium diphtheriae</i> Subsp. <i>diphtheriae</i> Subsp. nov. and <i>Corynebacterium diphtheriae</i> Subsp. <i>lausannense</i> Subsp. nov.
Tagini F., Pillonel T., Croxatto A., Bertelli C., Koutsokera A., Lovis A., Greub G., 2018. Frontiers in microbiology, 9 p. 1743. Peer-reviewed.
 
Environmental Metagenomic Assemblies Reveal Seven New Highly Divergent Chlamydial Lineages and Hallmarks of a Conserved Intracellular Lifestyle.
Pillonel T., Bertelli C., Greub G., 2018. Frontiers in microbiology, 9 p. 79. Peer-reviewed.
Reduced Chlorine in Drinking Water Distribution Systems Impacts Bacterial Biodiversity in Biofilms.
Bertelli C., Courtois S., Rosikiewicz M., Piriou P., Aeby S., Robert S., Loret J.F., Greub G., 2018. Frontiers in microbiology, 9 p. 2520. Peer-reviewed.
Cedratvirus lausannensis - digging into Pithoviridae diversity.
Bertelli C., Mueller L., Thomas V., Pillonel T., Jacquier N., Greub G., 2017/10. Environmental microbiology, 19 (10) pp. 4022-4034. Peer-reviewed.
IslandViewer 4: expanded prediction of genomic islands for larger-scale datasets.
Bertelli C., Laird M.R., Williams K.P., Simon Fraser University Research Computing Group, Lau B.Y., Hoad G., Winsor G.L., Brinkman FSL, 2017/07/03. Nucleic acids research, 45 (W1) pp. W30-W35. Peer-reviewed.
One Year Genome Evolution of Lausannevirus in Allopatric versus Sympatric Conditions.
Mueller L., Bertelli C., Pillonel T., Salamin N., Greub G., 2017/06/01. Genome biology and evolution, 9 (6) pp. 1432-1449. Peer-reviewed.
Genome of the carbapenemase-producing clinical isolate Elizabethkingia miricola EM_CHUV and comparative genomics with Elizabethkingia meningoseptica and Elizabethkingia anophelis: evidence for intrinsic multidrug resistance trait of emerging pathogens.
Opota O., Diene S.M., Bertelli C., Prod'hom G., Eckert P., Greub G., 2017/01. International journal of antimicrobial agents, 49 (1) pp. 93-97. Peer-reviewed.
Genotypes Associated with Listeria monocytogenes Isolates Displaying Impaired or Enhanced Tolerances to Cold, Salt, Acid, or Desiccation Stress.
Hingston P., Chen J., Dhillon B.K., Laing C., Bertelli C., Gannon V., Tasara T., Allen K., Brinkman F.S., Truelstrup Hansen L. et al., 2017. Frontiers in microbiology, 8 p. 369. Peer-reviewed.
Comparative genomics of Neisseria meningitidis strains: new targets for molecular diagnostics.
Diene S.M., Bertelli C., Pillonel T., Jacquier N., Croxatto A., Jaton K., Greub G., 2016/06. Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases, 22 (6) pp. 568.e1-7. Peer-reviewed.
CRISPR System Acquisition and Evolution of an Obligate Intracellular Chlamydia-Related Bacterium.
Bertelli C., Cissé O.H., Rusconi B., Kebbi-Beghdadi C., Croxatto A., Goesmann A., Collyn F., Greub G., 2016. Genome Biology and Evolution, 8 (8) pp. 2376-2386. Peer-reviewed.
EDGAR 2.0: an enhanced software platform for comparative gene content analyses.
Blom J., Kreis J., Spänig S., Juhre T., Bertelli C., Ernst C., Goesmann A., 2016. Nucleic Acids Research, 44 (W1) pp. W22-W28. Peer-reviewed.
The Genome of the Toluene-Degrading Pseudomonas veronii Strain 1YdBTEX2 and Its Differential Gene Expression in Contaminated Sand.
Morales M., Sentchilo V., Bertelli C., Komljenovic A., Kryuchkova-Mostacci N., Bourdilloud A., Linke B., Goesmann A., Harshman K., Segers F. et al., 2016. PloS one, 11 (11) pp. e0165850. Peer-reviewed.
 
Bifidobacterium longum Bacteremia in Preterm Infants Receiving Probiotics.
Bertelli C., Pillonel T., Torregrossa A., Prod'hom G., Fischer C.J., Greub G., Giannoni E., 2015. Clinical Infectious Diseases, 60 (6) pp. 924-927. Peer-reviewed.
Comparative genome analysis of Pseudomonas knackmussii B13, the first bacterium known to degrade chloroaromatic compounds.
Miyazaki R., Bertelli C., Benaglio P., Canton J., De Coi N., Gharib W.H., Gjoksi B., Goesmann A., Greub G., Harshman K. et al., 2015. Environmental Microbiology, 17 (1) pp. 91-104.
 
ESCCAR international congress on Rickettsia and other intracellular bacteria.
de Barsy M., Bertelli C., Jacquier N., Kebbi-Beghdadi C., Greub G., 2015. Microbes and Infection / Institut Pasteur, 17 (10) pp. 680-688. Peer-reviewed.
Sequencing and characterizing the genome of Estrella lausannensis as an undergraduate project: training students and biological insights.
Bertelli C., Aeby S., Chassot B., Clulow J., Hilfiker O., Rappo S., Ritzmann S., Schumacher P., Terrettaz C., Benaglio P. et al., 2015. Frontiers in Microbiology, 6 (101) p. 101. Peer-reviewed.
Taxogenomics of the order Chlamydiales.
Pillonel T., Bertelli C., Salamin N., Greub G., 2015. International Journal of Systematic and Evolutionary Microbiology, 65 (Pt 4) pp. 1381-1393. Peer-reviewed.
Génomique et métagénomique bactériennes: applications cliniques et importance médicale [Bacterial genomics and metagenomics: clinical applications and medical relevance]
Diene S.M., Bertelli C., Pillonel T., Schrenzel J., Greub G., 2014/11/12. Revue medicale suisse, 10 (450) pp. 2155-2161. Peer-reviewed.
Comparative genomics of koala, cattle and sheep strains of Chlamydia pecorum.
Bachmann N.L., Fraser T.A., Bertelli C., Jelocnik M., Gillett A., Funnell O., Flanagan C., Myers G.S., Timms P., Polkinghorne A., 2014. BMC Genomics, 15 p. 667. Peer-reviewed.
Criblamydia sequanensis Harbors a Megaplasmid Encoding Arsenite Resistance.
Bertelli C., Goesmann A., Greub G., 2014. Genome Announcements, 2 (5) pp. e00949-14. Peer-reviewed.
Crescent and star shapes of members of the Chlamydiales order: impact of fixative methods.
Rusconi B., Lienard J., Aeby S., Croxatto A., Bertelli C., Greub G., 2013. Antonie Van Leeuwenhoek, 104 (4) pp. 521-532. Peer-reviewed.
Genome of Acanthamoeba castellanii highlights extensive lateral gene transfer and early evolution of tyrosine kinase signaling.
Clarke M., Lohan A.J., Liu B., Lagkouvardos I., Roy S., Zafar N., Bertelli C., Schilde C., Kianianmomeni A., Bürglin T.R. et al., 2013. Genome Biology, 14 (2) pp. R11. Peer-reviewed.
Lausannevirus Seroprevalence among Asymptomatic Young Adults.
Mueller L., Baud D., Bertelli C., Greub G., 2013. Intervirology, 56 (6) pp. 430-433.
 
Phyla Related to Planctomycetes: Members of Phylum Chlamydiae and Their Implications for Planctomycetes Cell Biology
Bertelli C, Greub G, 2013. pp. 229-241 dans Planctomycetes: Cell Structure, Origins and Biology, Humana Press.
 
Rapid bacterial genome sequencing: methods and applications in clinical microbiology.
Bertelli C., Greub G., 2013. Clinical Microbiology and Infection, 19 (9) pp. 803-813.
 
RNA pentaloop structures as effective targets of regulators belonging to the RsmA/CsrA protein family.
Lapouge K., Perozzo R., Iwaszkiewicz J., Bertelli C., Zoete V., Michielin O., Scapozza L., Haas D., 2013. RNA Biology, 10 (6) pp. 1031-1041. Peer-reviewed.
 
Insights in the biology of Chlamydiae
Kebbi-Beghdadi Carole, Bertelli Claire, Greub Gilbert, 2012. pp. 121-146 dans Ghigo Eric, Mottola Giovanna, Mege Jean-Louis (eds.) Host-Pathogen Interaction: At the Frontier of Cellular Microbiology chap. 8, Transworld Research Network.
Lateral gene exchanges shape the genomes of amoeba-resisting microorganisms.
Bertelli C., Greub G., 2012. Frontiers In Cellular and Infection Microbiology, 2 p. 110. Peer-reviewed.
Insight into cross-talk between intra-amoebal pathogens.
Gimenez G., Bertelli C., Moliner C., Robert C., Raoult D., Fournier P.E., Greub G., 2011. BMC Genomics, 12 p. 542.
Lausannevirus, a giant amoebal virus encoding histone doublets.
Thomas V., Bertelli C., Collyn F., Casson N., Telenti A., Goesmann A., Croxatto A., Greub G., 2011. Environmental Microbiology, 13 (6) pp. 1454-1466. Peer-reviewed.
The Waddlia genome: a window into chlamydial biology.
Bertelli Claire, Collyn Francois, Croxatto Antony, Rueckert Christian, Polkinghorne Adam, Kebbi-Beghdadi Carole, Goesmann Alexander, Vaughan Lloyd, Greub Gilbert, 2010. PloS One, 5 (5) p. 10890.
High throughput sequencing and proteomics to identify immunogenic proteins of a new pathogen: the dirty genome approach.
Greub G., Kebbi-Beghdadi C., Bertelli C., Collyn F., Riederer B.M., Yersin C., Croxatto A., Raoult D., 2009/12/23. PloS one, 4 (12) pp. e8423. Peer-reviewed.
Low prevalence of Chlamydia trachomatis infection in asymptomatic young Swiss men
Baud D., Jaton K., Bertelli C., Kulling J.P., Greub G., 2008. BMC Infectious Diseases, 8 (45) pp. 1-5. Peer-reviewed.
Partagez:
Unicentre - CH-1015 Lausanne
Suisse
Tél. +41 21 692 11 11
Fax. +41 21 692 26 15
Swiss University