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UNIL > Unisciences >
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AFFICHER LES DONNEES
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Jan Roelof Van Der Meer

Coordonnées Recherches Enseignements Publications  

Publications

Articles

Sentchilo V., Mayer A.P., Guy L., Miyazaki R., Green Tringe S., Barry K., Malfatti S., Goessmann A., Robinson-Rechavi M., van der Meer J.R., Community-wide plasmid gene mobilization and selection. ISME Journal 7(6), pp. 1173-1186, 2013. [DOI] [Web of Science] [Pubmed]

Cortés-Salazar F., Beggah S., van der Meer J.R., Girault H.H., Electrochemical As(III) whole-cell based biochip sensor. Biosensors and Bioelectronics 47, pp. 237-242, 2013. [DOI] [Web of Science] [Pubmed]

Czechowska K., Sentchilo V., Beggah S., Rey S., Seyfried M., van der Meer J.R., Examining chemical compound biodegradation at low concentrations through bacterial cell proliferation. Environmental Science and Technology 47(4), pp. 1913-1921, 2013. [DOI] [Web of Science] [Pubmed]

Reinhard F., Miyazaki R., Pradervand N., van der Meer J.R., Cell differentiation to "mating bodies" induced by an integrating and conjugative element in free-living bacteria. Current Biology 23(3), pp. 255-259, 2013. [DOI] [Web of Science] [Pubmed]

Miyazaki R., van der Meer J.R., A New Large-DNA-Fragment Delivery System Based on Integrase Activity from an Integrative and Conjugative Element. Applied and Environmental Microbiology 79(14), pp. 4440-4447, 2013. [DOI] [Web of Science] [Pubmed] ok

Reinhard F., van der Meer J.R., Improved statistical analysis of low abundance phenomena in bimodal bacterial populations. PLoS One 8(10), p. e78288, 2013. [DOI] [Web of Science] [Pubmed]

Roggo C., Coronado E., Moreno-Forero S.K., Harshman K., Weber J., van der Meer J.R., Genome-wide transposon insertion scanning of environmental survival functions in the polycyclic aromatic hydrocarbon degrading bacterium Sphingomonas wittichii RW1. Environmental Microbiology 15(10), pp. 2681-2695, 2013. [DOI] [Web of Science] [Pubmed]

Schamfuß S., Neu T.R., van der Meer J.R., Tecon R., Harms H., Wick L.Y., Impact of mycelia on the accessibility of fluorene to PAH-degrading bacteria. Environmental Science and Technology 47(13), pp. 6908-6915, 2013. [DOI] [Web of Science] [Pubmed]

Merulla D., Hatzimanikatis V., van der Meer J.R., Tunable reporter signal production in feedback-uncoupled arsenic bioreporters. Microbial Biotechnology 6(5), pp. 503-514, 2013. [DOI] [Web of Science] [Pubmed] ok

Czechowska K., Reimmann C., van der Meer J.R., Characterization of a MexAB-OprM efflux system necessary for productive metabolism of Pseudomonas azelaica HBP1 on 2-hydroxybiphenyl. Frontiers in Microbiology 4, p. 203, 2013. [DOI] [Pubmed]

Coronado E., Roggo C., Johnson D.R., van der Meer J.R., Genome-Wide Analysis of Salicylate and Dibenzofuran Metabolism in Sphingomonas Wittichii RW1. Frontiers in Microbiology 3, p. 300, 2012. [DOI] [Pubmed]

Czechowska K., van der Meer J.R., Reversible and irreversible pollutant-induced bacterial cellular stress effects measured by ethidium bromide uptake and efflux. Environmental Science and Technology 46(2), pp. 1201-1208, 2012. [DOI] [Web of Science] [Pubmed]

Fida T.T., Breugelmans P., Lavigne R., Coronado E., Johnson D.R., van der Meer J.R., Mayer A.P., Heipieper H.J., Hofkens J., Springael D., Exposure to solute stress affects genome-wide expression but not the polycyclic aromatic hydrocarbon-degrading activity of Sphingomonas sp. strain LH128 in biofilms. Applied and Environmental Microbiology 78(23), pp. 8311-8320, 2012. [DOI] [Web of Science] [Pubmed]

Siegfried K., Endes C., Bhuiyan A.F., Kuppardt A., Mattusch J., van der Meer J.R., Chatzinotas A., Harms H., Field testing of arsenic in groundwater samples of Bangladesh using a test kit based on lyophilized bioreporter bacteria. Environmental Science and Technology 46(6), pp. 3281-3287, 2012. [DOI] [Web of Science] [Pubmed]

Miyazaki R., Minoia M., Pradervand N., Sulser S., Reinhard F., van der Meer J.R., Cellular variability of RpoS expression underlies subpopulation activation of an integrative and conjugative element. PLoS Genetics 8(7), p. e1002818, 2012. [DOI] [Web of Science] [Pubmed] ok

Miyazaki R., van der Meer J.R., A dual functional origin of transfer in the ICEclc genomic island of Pseudomonas knackmussii B13. Molecular Microbiology 79(3), pp. 743-758, 2011. [DOI] [Web of Science] [Pubmed]

Buffi N., Merulla D., Beutier J., Barbaud F., Beggah S., van Lintel H., Renaud P., van der Meer J.R., Development of a microfluidics biosensor for agarose-bead immobilized Escherichia coli bioreporter cells for arsenite detection in aqueous samples. Lab On A Chip 11(14), pp. 2369-2377, 2011. [DOI] [Web of Science] [Pubmed]

Buffi N., Merulla D., Beutier J., Barbaud F., Beggah S., van Lintel H., Renaud P., van der Meer J.R., Miniaturized bacterial biosensor system for arsenic detection holds great promise for making integrated measurement device. Bioengineered Bugs 2(5), pp. 296-298, 2011. [DOI] [Pubmed]

Miyazaki R., van der Meer J.R., How can a dual oriT system contribute to efficient transfer of an integrative and conjugative element? Mobile Genetic Elements 1(1), pp. 82-84, 2011. [DOI] [Pubmed]

Fida T.T., Breugelmans P., Lavigne R., Coronado E., Johnson D., Van Der Meer J.R., Mayer A., Hofkens J., Springael D., Transcriptomic analysis of phenanthrene degrading Sphingomonas biofilms exposed to environmentally relevant solute and matric stresses. Communications in Agricultural and Applied Biological Sciences 76(1), pp. 69-72, 2011. [Pubmed]

Vogne C., Bisht H., Arias S., Fraile S., Lal R., van der Meer J.R., Characterisation of the putative effector interaction site of the regulatory HbpR protein from Pseudomonas azelaica by site-directed mutagenesis. PLoS One 6(2), p. e16539, 2011. [DOI] [Web of Science] [Pubmed]

Kumari R., Tecon R., Beggah S., Rutler R., Arey J.S., van der Meer J.R., Development of bioreporter assays for the detection of bioavailability of long-chain alkanes based on the marine bacterium Alcanivorax borkumensis strain SK2. Environmental Microbiology 13(10), pp. 2808-2819, 2011. [DOI] [Web of Science] [Pubmed]

Czechowska K., van der Meer J.R., A flow cytometry based oligotrophic pollutant exposure test to detect bacterial growth inhibition and cell injury. Environmental Science and Technology 45(13), pp. 5820-5827, 2011. [DOI] [Web of Science] [Pubmed]

Johnson D.R., Coronado E., Moreno-Forero S.K., Heipieper H.J., van der Meer J.R., Transcriptome and membrane fatty acid analyses reveal different strategies for responding to permeating and non-permeating solutes in the bacterium Sphingomonas wittichii. BMC Microbiology 11(1), p. 250, 2011. [DOI] [Web of Science] [Pubmed]

Gaillard M., Pradervand N., Minoia M., Sentchilo V., Johnson D.R., van der Meer J.R., Transcriptome analysis of the mobile genome ICEclc in Pseudomonas knackmussii B13. BMC Microbiology 10, p. 153, 2010. [DOI] [Web of Science] [Pubmed]

Tecon R., Beggah S., Czechowska K., Sentchilo V., Chronopoulou P.M., McGenity T.J., van der Meer J.R., Development of a multistrain bacterial bioreporter platform for the monitoring of hydrocarbon contaminants in marine environments. Environmental science and technology 44(3), pp. 1049-1055, 2010. [DOI] [Web of Science] [Pubmed] ok

Tecon R., van der Meer J.R., Effect of two types of biosurfactants on phenanthrene availability to the bacterial bioreporter Burkholderia sartisoli strain RP037. Applied microbiology and biotechnology 85(4), pp. 1131-1139, 2010. [DOI] [Web of Science] [Pubmed] ok

Scheublin T.R., Sanders I.R., Keel C., van der Meer J.R., Characterisation of microbial communities colonising the hyphal surfaces of arbuscular mycorrhizal fungi. ISME Journal 4(6), pp. 752-763, 2010. [DOI] [Web of Science] [Pubmed]

Tecon R., Binggeli O., van der Meer J.R., Double-tagged fluorescent bacterial bioreporter for the study of polycyclic aromatic hydrocarbon diffusion and bioavailability. Environmental Microbiology 11(9), pp. 2271-2283, 2009. [DOI] [Web of Science] [Pubmed]

Kuppardt A., Chatzinotas A., Breuer U., van der Meer J.R., Harms H., Optimization of preservation conditions of As (III) bioreporter bacteria. Applied microbiology and biotechnology 82(4), pp. 785-792, 2009. [DOI] [Web of Science] [Pubmed] ok

Ewis C.L., Beggah S., Pook C., Guitart C., Redshaw C., van der Meer J.R., Readman J.W., Galloway T., Novel use of a whole cell E. coli bioreporter as a urinary exposure biomarker. Environmental Science and Technology 43(2), pp. 423-428, 2009. [DOI] [Web of Science] [Pubmed] ok

Deepthike H.U., Tecon R., Van Kooten G., Van der Meer J.R., Harms H., Wells M., Short J., Unlike PAHs from Exxon Valdez crude oil, PAHs from Gulf of Alaska coals are not readily bioavailable. Environmental Science and Technology 43(15), pp. 5864-5870, 2009. [DOI] [Web of Science] [Pubmed] ok

Diesel E., Schreiber M., van der Meer J.R., Development of bacteria-based bioassays for arsenic detection in natural waters. Analytical and Bioanalytical Chemistry 394(3), pp. 687-693, 2009. [DOI] [Web of Science] [Pubmed] ok

Sentchilo V., Czechowska K., Pradervand N., Minoia M., Miyazaki R., van der Meer J.R., Intracellular excision and reintegration dynamics of the ICEclc genomic island of Pseudomonas knackmussii sp. strain B13. Molecular microbiology 72(5), pp. 1293-1306, 2009. [DOI] [Web of Science] [Pubmed] ok

Johnson D.R., Czechowska K., Chèvre N., van der Meer J.R., Toxicity of triclosan, penconazole and metalaxyl on Caulobacter crescentus and a freshwater microbial community as assessed by flow cytometry. Environmental Microbiology 11, pp. 1682-1691, 2009. [DOI] ok

Raina V., Suar M., Singh A., Prakash O., Dadhwal M., Gupta S.K., Dogra C., Lawlor K., Lal S., van der Meer J.R. et al., Enhanced biodegradation of hexachlorocyclohexane (HCH) in contaminated soils via inoculation with Sphingobium indicum B90A. Biodegradation 19(1), pp. 27-40, 2008. [DOI] [Web of Science] [Pubmed]

Beggah S., Vogne C., Zenaro E., Van Der Meer J.R., Mutant HbpR transcription activator isolation for 2-chlorobiphenyl via green fluorescent protein-based flow cytometry and cell sorting. Microbial Biotechnology 1(1), pp. 68-78, 2008. [DOI] [Web of Science] [Pubmed]

Meier C., Wehrli B., van der Meer J.R., Seasonal fluctuations of bacterial community diversity in agricultural soil and experimental validation by laboratory disturbance experiments. Microbial Ecology 56(2), pp. 210-222, 2008. [DOI] [Web of Science] [Pubmed]

Vanlaere E., van der Meer J.R., Falsen E., Salles J.F., de Brandt E., Vandamme P., Burkholderia sartisoli sp. nov., isolated from a polycyclic aromatic hydrocarbon-contaminated soil. International Journal of Systematic and Evolutionary Microbiology 58(Pt 2), pp. 420-423, 2008. [DOI] [Web of Science] [Pubmed]

Gaillard M., Pernet N., Vogne C., Hagenbuchle O., van der Meer J. R., Host and invader impact of transfer of the clc genomic island into Pseudomonas aeruginosa PAO1. Proceedings of the National Academy of Sciences of the United States of America 105(19), pp. 7058-7063, 2008. [DOI] [Web of Science] [Pubmed] ok

Wackwitz A., Harms H., Chatzinotas A., Breuer U., Vogne C., van der Meer J. R., Internal arsenite bioassay calibration using multiple reporter cell lines. Microbial Biotechnology 1(2), pp. 149-157, 2008. [Document] [DOI] ok

Kohlmeier S., Mancuso M., Deepthike U., Tecon R., van der Meer J.R., Harms H., Wells M., Comparison of naphthalene bioavailability determined by whole-cell biosensing and availability determined by extraction with Tenax. Environmental Pollution 156(3), pp. 803-808, 2008. [Document] [DOI] [Web of Science] [Pubmed] ok

Minoia M., Gaillard M., Reinhard F., Stojanov M., Sentchilo V., van der Meer J.R., Stochasticity and bistability in horizontal transfer control of a genomic island in Pseudomonas. Proceedings of the National Academy of Sciences of the United States of America 105(52), pp. 20792-20797, 2008. [Document] [DOI] [Web of Science] [Pubmed] ok

Baumann B., van der Meer J.R., Analysis of bioavailable arsenic in rice with whole cell living bioreporter bacteria. Journal of Agricultural and Food Chemistry 55(6), pp. 2115-2120, 2007. [DOI] [Web of Science] [Pubmed]

Kohlmeier S., Mancuso M., Tecon R., Harms H., van der Meer J.R., Wells M., Bioreporters: gfp versus lux revisited and single-cell response. Biosensors and Bioelectronics 22(8), pp. 1578-1585, 2007. [DOI] [Web of Science] [Pubmed]

Busam S., McNabb M., Wackwitz A., Senevirathna W., Beggah S., Meer J.R., Wells M., Breuer U., Harms H., Artificial neural network study of whole-cell bacterial bioreporter response determined using fluorescence flow cytometry. Analytical Chemistry 79(23), pp. 9107-9114, 2007. [DOI] [Web of Science] [Pubmed]

Gaillard M., Vallaeys T., Vorhölter F.J., Minoia M., Werlen C., Sentchilo V., Pühler A., van der Meer J.R., The clc element of Pseudomonas sp. strain B13, a genomic island with various catabolic properties. Journal of Bacteriology 188(5), pp. 1999-2013, 2006. [DOI] [Web of Science] [Pubmed]

Paul D., Pandey G., Meier C., van der Meer J.R., Jain R.K., Bacterial community structure of a pesticide-contaminated site and assessment of changes induced in community structure during bioremediation. Fems Microbiology Ecology 57(1), pp. 116-127, 2006. [DOI] [Web of Science] [Pubmed]

Müller T.A., Fleischmann T., van der Meer J.R., Kohler H.P., Purification and characterization of two enantioselective alpha-ketoglutarate-dependent dioxygenases, RdpA and SdpA, from Sphingomonas herbicidovorans MH. Applied and Environmental Microbiology 72(7), pp. 4853-4861, 2006. [DOI] [Web of Science] [Pubmed]

Tecon R., Wells M., van der Meer J.R., A new green fluorescent protein-based bacterial biosensor for analysing phenanthrene fluxes. Environmental Microbiology 8(4), pp. 697-708, 2006. [DOI] [Web of Science] [Pubmed]

Harms H., Rime J., Hug S.J., van der Meer J.R., Effect of groundwater composition on arsenic detection by bacterial biosensors. Microchimica Acta 151(3-4), pp. 217-222, 2005. [DOI] [Web of Science] ok

Tropel D., van der Meer J.R., Characterization of HbpR binding by site-directed mutagenesis of its DNA-binding site and by deletion of the effector domain. FEBS Journal 272(7), pp. 1756-1766, 2005. [DOI] [Web of Science] [Pubmed]

Suar M., Hauser A., Poiger T., Buser H.R., Müller M.D., Dogra C., Raina V., Holliger C., van der Meer J.R., Lal R. et al., Enantioselective transformation of alpha-hexachlorocyclohexane by the dehydrochlorinases LinA1 and LinA2 from the soil bacterium Sphingomonas paucimobilis B90A. Applied and Environmental Microbiology 71(12), pp. 8514-8518, 2005. [DOI] [Web of Science] [Pubmed]

Wells M., Gösch M., Harms H., Van Der Meer J. R., Response characteristics of arsenic-sensitive bioreporters expressing the gfp reporter gene. Microchimica Acta 151(3-4), pp. 209-216, 2005. [DOI] [Web of Science] ok

Trang P.T., Berg M., Viet P.H., Van Mui N., Van Der Meer J.R., Bacterial bioassay for rapid and accurate analysis of arsenic in highly variable groundwater samples. Environmental Science and Technology 39(19), pp. 7625-7630, 2005. [DOI] [Web of Science] [Pubmed]

Wells M., Gösch M., Rigler R., Harms H., Lasser T., van der Meer J.R., Ultrasensitive reporter protein detection in genetically engineered bacteria. Analytical Chemistry 77(9), pp. 2683-2689, 2005. [DOI] [Web of Science] [Pubmed]

Brendan Logue J., Robinson C.T., Meier C., Van Der Meer J.R., Relationship between sediment organic matter, bacteria composition, and the ecosystem metabolism of alpine streams. Limnology and Oceanography 49(6), pp. 2001-2010, 2004. [Web of Science] ok

Werlen C., Jaspers M.C., van der Meer J.R., Measurement of biologically available naphthalene in gas and aqueous phases by use of a Pseudomonas putida biosensor. Applied and Environmental Microbiology 70(1), pp. 43-51, 2004. [DOI] [Web of Science] [Pubmed]

Suar M., van der Meer J.R., Lawlor K., Holliger C., Lal R., Dynamics of multiple lin gene expression in Sphingomonas paucimobilis B90A in response to different hexachlorocyclohexane isomers. Applied and Environmental Microbiology 70(11), pp. 6650-6656, 2004. [DOI] [Web of Science] [Pubmed]

Tropel D., Bähler A., Globig K., van der Meer J.R., Design of new promoters and of a dual-bioreporter based on cross-activation by the two regulatory proteins XylR and HbpR. Environmental Microbiology 6(11), pp. 1186-1196, 2004. [DOI] [Web of Science] [Pubmed]

Müller T.A., Byrde S.M., Werlen C., van der Meer J.R., Kohler H.P., Genetic analysis of phenoxyalkanoic acid degradation in Sphingomonas herbicidovorans MH. Applied and Environmental Microbiology 70(10), pp. 6066-6075, 2004. [DOI] [Web of Science] [Pubmed]

Laemmli C., Werlen C., van der Meer J.R., Mutation analysis of the different tfd genes for degradation of chloroaromatic compounds in Ralstonia eutropha JMP134. Archives of Microbiology 181(2), pp. 112-121, 2004. [DOI] [Web of Science] [Pubmed]

Dogra C., Raina V., Pal R., Suar M., Lal S., Gartemann K.H., Holliger C., van der Meer J.R., Lal R., Organization of lin genes and IS6100 among different strains of hexachlorocyclohexane-degrading Sphingomonas paucimobilis: evidence for horizontal gene transfer. Journal of Bacteriology 186(8), pp. 2225-2235, 2004. [DOI] [Pubmed]

Van der Meer J.R., Gaillard M., Sentchilo V., Ilots génomiques et transfert horizontal de gènes entre bactéries. EAWAG News 56, pp. 6-9, 2003. [url site éditeur]

Stocker J, van der Meer JR, Bakterielle biosensoren zur Bestimmung von arsen im Trinkwasser. EAWAG News 56, pp. 12-15, 2003.

Fux C., Egli K., van der Meer J.R., Siegrist H.R., Le procédé Anammox pour l'élimination de l'azote dans les stations d'épuration. EAWAG News 56, pp. 20-21, 2003. [url site éditeur]

Stocker J., Balluch D., Gsell M., Harms H., Feliciano J., Daunert S., Malik K.A., van der Meer J.R., Development of a set of simple bacterial biosensors for quantitative and rapid measurements of arsenite and arsenate in potable water. Environmental Science and Technology 37(20), pp. 4743-4750, 2003. [DOI] [Web of Science] [Pubmed]

Füchslin H.P., Rüegg I., Van Der Meer J.R., Egli T., Effect of integration of a GFP reporter gene on fitness of Ralstonia eutropha during growth with 2,4-dichlorophenoxyacetic acid. Environmental Microbiology 5(10), pp. 878-887, 2003. [DOI] [Web of Science] [Pubmed]

Sentchilo V., Ravatn R., Werlen C., Zehnder A.J., van der Meer J.R., Unusual integrase gene expression on the clc genomic island in Pseudomonas sp. strain B13. Journal of Bacteriology 185(15), pp. 4530-4538, 2003. [DOI] [Web of Science] [Pubmed]

Egli K., Bosshard F., Werlen C., Lais P., Siegrist H., Zehnder A.J., Van der Meer J.R., Microbial composition and structure of a rotating biological contactor biofilm treating ammonium-rich wastewater without organic carbon. Microbial Ecology 45(4), pp. 419-432, 2003. [DOI] [Web of Science] [Pubmed]

Sentchilo V., Zehnder A.J., van der Meer J.R., Characterization of two alternative promoters for integrase expression in the clc genomic island of Pseudomonas sp. strain B13. Molecular Microbiology 49(1), pp. 93-104, 2003. [DOI] [Web of Science] [Pubmed]

Müller T.A., Werlen C., Spain J., Van Der Meer J.R., Evolution of a chlorobenzene degradative pathway among bacteria in a contaminated groundwater mediated by a genomic island in Ralstonia. Environmental Microbiology 5(3), pp. 163-173, 2003. [DOI] [Web of Science] [Pubmed]

Egli K., Langer C., Siegrist H.R., Zehnder A.J., Wagner M., van der Meer J.R., Community analysis of ammonia and nitrite oxidizers during start-up of nitritation reactors. Applied and Environmental Microbiology 69(6), pp. 3213-3222, 2003. [DOI] [Web of Science] [Pubmed]

Kumari R., Subudhi S., Suar M., Dhingra G., Raina V., Dogra C., Lal S., van der Meer J.R., Holliger C., Lal R., Cloning and characterization of lin genes responsible for the degradation of Hexachlorocyclohexane isomers by Sphingomonas paucimobilis strain B90. Applied and Environmental Microbiology 68(12), pp. 6021-6028, 2002. [DOI] [Web of Science] [Pubmed]

Laemmli C.M., Schönenberger R., Suter M., Zehnder A.J., van der Meer J.R., TfdD(II), one of the two chloromuconate cycloisomerases of Ralstonia eutropha JMP134 (pJP4), cannot efficiently convert 2-chloro- cis, cis-muconate to trans-dienelactone to allow growth on 3-chlorobenzoate. Archives of Microbiology 178(1), pp. 13-25, 2002. [DOI] [Web of Science] [Pubmed] ok

Tropel D., van der Meer J.R., Identification and physical characterization of the HbpR binding sites of the hbpC and hbpD promoters. Journal of Bacteriology 184(11), pp. 2914-2924, 2002. [DOI] [Web of Science] [Pubmed] ok

Springael D., Peys K., Ryngaert A., Van Roy S., Hooyberghs L., Ravatn R., Heyndrickx M., van der Meer J.R., Vandecasteele C., Mergeay M. et al., Community shifts in a seeded 3-chlorobenzoate degrading membrane biofilm reactor: indications for involvement of in situ horizontal transfer of the clc-element from inoculum to contaminant bacteria. Environmental Microbiology 4(2), pp. 70-80, 2002. [DOI] [Web of Science] [Pubmed] ok

Jaspers M.C., Schmid A., Sturme M.H., Goslings D.A., Kohler H.P., Roelof Van Der Meer J., Transcriptional organization and dynamic expression of the hbpCAD genes, which encode the first three enzymes for 2-hydroxybiphenyl degradation in Pseudomonas azelaica HBP1. Journal of Bacteriology 183(1), pp. 270-279, 2001. [DOI] [Web of Science] [Pubmed] ok

Power M., van der Meer J.R., Harms H., Wanner O., Colonization of aerobic biofilms by sulfate-reducing bacteria. Biofouling 17(4), pp. 275-288, 2001. [Web of Science]

Jaspers M.C., Meier C., Zehnder A.J., Harms H., van der Meer J.R., Measuring mass transfer processes of octane with the help of an alkSalkB::gfp-tagged Escherichia coli. Environmental Microbiology 3(8), pp. 512-524, 2001. [DOI] [Web of Science] [Pubmed] ok

Raschke H., Meier M., Burken J.G., Hany R., Müller M.D., Van Der Meer J.R., Kohler H.P., Biotransformation of various substituted aromatic compounds to chiral dihydrodihydroxy derivatives. Applied and Environmental Microbiology 67(8), pp. 3333-3339, 2001. [DOI] [Web of Science] [Pubmed] ok

Jaspers M.C., Sturme M., van der Meer J.R., Unusual location of two nearby pairs of upstream activating sequences for HbpR, the main regulatory protein for the 2-hydroxybiphenyl degradation pathway of "Pseudomonas azelaica" HBP1. Microbiology 147(Pt 8), pp. 2183-2194, 2001. [Web of Science] [Pubmed] ok

Egli K., Fanger U., Alvarez P.J., Siegrist H., van der Meer J.R., Zehnder A.J., Enrichment and characterization of an anammox bacterium from a rotating biological contactor treating ammonium-rich leachate. Archives of Microbiology 175(3), pp. 198-207, 2001. [DOI] [Web of Science] [Pubmed] ok

Koch G., Egli K., van der Meer J.R., Siegrist H., Mathematical modeling of autotrophic denitrification in a nitrifying biofilm of a rotating biological contactor. Water Science and Technology 41(4-5), pp. 191-198, 2000. [Web of Science] ok

Laemmli C.M., Leveau J.H., Zehnder A.J., van der Meer J.R., Characterization of a second tfd gene cluster for chlorophenol and chlorocatechol metabolism on plasmid pJP4 in Ralstonia eutropha JMP134(pJP4). Journal of Bacteriology 182(15), pp. 4165-4172, 2000. [DOI] [Web of Science] [Pubmed] ok

Jaspers M.C., Suske W.A., Schmid A., Goslings D.A., Kohler H.P., van der Meer J.R., HbpR, a new member of the XylR/DmpR subclass within the NtrC family of bacterial transcriptional activators, regulates expression of 2-hydroxybiphenyl metabolism in Pseudomonas azelaica HBP1. Journal of Bacteriology 182(2), pp. 405-417, 2000. [DOI] [Web of Science] [Pubmed] ok

Sentchilo V.S., Perebituk A.N., Zehnder A.J., van der Meer J.R., Molecular diversity of plasmids bearing genes that encode toluene and xylene metabolism in Pseudomonas strains isolated from different contaminated sites in Belarus. Applied and Environmental Microbiology 66(7), pp. 2842-2852, 2000. [DOI] [Web of Science] [Pubmed] ok

Hesselmann R.P., Werlen C., Hahn D., van der Meer J.R., Zehnder A.J., Enrichment, phylogenetic analysis and detection of a bacterium that performs enhanced biological phosphate removal in activated sludge. Systematic and Applied Microbiology 22(3), pp. 454-465, 1999. [DOI] [Web of Science] [Pubmed] ok

Raschke H., Fleischmann T., Van Der Meer J.R., Kohler H.P., cis-chlorobenzene dihydrodiol dehydrogenase (TcbB) from Pseudomonas sp. strain P51, expressed in Escherichia coli DH5alpha(pTCB149), catalyzes enantioselective dehydrogenase reactions. Applied and Environmental Microbiology 65(12), pp. 5242-5246, 1999. [Web of Science] [Pubmed] ok

Tchelet R., Meckenstock R., Steinle P., van der Meer J.R., Population dynamics of an introduced bacterium degrading chlorinated benzenes in a soil column and in sewage sludge. Biodegradation 10(2), pp. 113-125, 1999. [DOI] [Web of Science] [Pubmed] ok

Leveau J.H., König F., Füchslin H., Werlen C., Van Der Meer J.R., Dynamics of multigene expression during catabolic adaptation of Ralstonia eutropha JMP134 (pJP4) to the herbicide 2, 4-dichlorophenoxyacetate. Molecular Microbiology 33(2), pp. 396-406, 1999. [DOI] [Web of Science] [Pubmed] ok

Power M., Araujo J.C., van der Meer J.R., Harms H., Wanner O., Monitoring sulfate-reducing bacteria in heterotrophic biofilms. Water Science and Technology 39(7), pp. 49-56, 1999. [DOI]

Ravatn R., Studer S., Zehnder A.J., van der Meer J.R., Int-B13, an unusual site-specific recombinase of the bacteriophage P4 integrase family, is responsible for chromosomal insertion of the 105-kilobase clc element of Pseudomonas sp. Strain B13. Journal of Bacteriology 180(21), pp. 5505-5514, 1998. [Web of Science] [Pubmed] ok

Ravatn R., Zehnder A.J., van der Meer J.R., Low-frequency horizontal transfer of an element containing the chlorocatechol degradation genes from Pseudomonas sp. strain B13 to Pseudomonas putida F1 and to indigenous bacteria in laboratory-scale activated-sludge microcosms. Applied and Environmental Microbiology 64(6), pp. 2126-2132, 1998. [Web of Science] [Pubmed] ok

Meckenstock R., Steinle P., van der Meer J.R., Snozzi M., Quantification of bacterial mRNA involved in degradation of 1,2,4-trichlorobenzene by Pseudomonas sp. strain P51 from liquid culture and from river sediment by reverse transcriptase PCR (RT/PCR). FEMS Microbiology Letters 167(2), pp. 123-129, 1998. [DOI] [Web of Science] [Pubmed] ok

Leveau J.H., Zehnder A.J., van der Meer J.R., The tfdK gene product facilitates uptake of 2,4-dichlorophenoxyacetate by Ralstonia eutropha JMP134(pJP4). Journal of Bacteriology 180(8), pp. 2237-2243, 1998. [Web of Science] [Pubmed] ok

Ravatn R., Studer S., Springael D., Zehnder A.J., van der Meer J.R., Chromosomal integration, tandem amplification, and deamplification in Pseudomonas putida F1 of a 105-kilobase genetic element containing the chlorocatechol degradative genes from Pseudomonas sp. Strain B13. Journal of Bacteriology 180(17), pp. 4360-4369, 1998. [Web of Science] [Pubmed] ok

van der Meer J.R., Werlen C., Nishino S.F., Spain J.C., Evolution of a pathway for chlorobenzene metabolism leads to natural attenuation in contaminated groundwater. Applied and Environmental Microbiology 64(11), pp. 4185-4193, 1998. [Web of Science] [Pubmed] ok

Leveau J.H., van der Meer J.R., Genetic characterization of insertion sequence ISJP4 on plasmid pJP4 from Ralstonia eutropha JMP134. Gene 202(1-2), pp. 103-114, 1997. [DOI] [Web of Science] [Pubmed] ok

Baumann B., Snozzi M., van der Meer J.R., Zehnder A.J.B., Development of stable denitrifying cultures during repeated aerobic-anaerobic transient periods. Water Research 31(8), pp. 1947-1954, 1997. [DOI]

Sticher P., Jaspers M.C., Stemmler K., Harms H., Zehnder A.J., van der Meer J.R., Development and characterization of a whole-cell bioluminescent sensor for bioavailable middle-chain alkanes in contaminated groundwater samples. Applied and Environmental Microbiology 63(10), pp. 4053-4060, 1997. [Web of Science] [Pubmed] ok

Baumann B., van der Meer J.R., Snozzi M., Zehnder A.J., Inhibition of denitrification activity but not of mRNA induction in Paracoccus denitrificans by nitrite at a suboptimal pH. Antonie van Leeuwenhoek 72(3), pp. 183-189, 1997. [DOI] [Web of Science] [Pubmed] ok

Knobel H.R., Egli T., van der Meer J.R., Cloning and characterization of the genes encoding nitrilotriacetate monooxygenase of Chelatobacter heintzii ATCC 29600. Journal of Bacteriology 178(21), pp. 6123-6132, 1996. [Web of Science] [Pubmed] ok

Werlen C., Kohler H.P., van der Meer J.R., The broad substrate chlorobenzene dioxygenase and cis-chlorobenzene dihydrodiol dehydrogenase of Pseudomonas sp. strain P51 are linked evolutionarily to the enzymes for benzene and toluene degradation. Journal of Biological Chemistry 271(8), pp. 4009-4016, 1996. [Web of Science] [Pubmed] ok

Baumann B., Snozzi M., Zehnder A.J., Van Der Meer J.R., Dynamics of denitrification activity of Paracoccus denitrificans in continuous culture during aerobic-anaerobic changes. Journal of Bacteriology 178(15), pp. 4367-4374, 1996. [Web of Science] [Pubmed] ok

Leveau J.H., van der Meer J.R., The tfdR gene product can successfully take over the role of the insertion element-inactivated TfdT protein as a transcriptional activator of the tfdCDEF gene cluster, which encodes chlorocatechol degradation in Ralstonia eutropha JMP134(pJP4). Journal of Bacteriology 178(23), pp. 6824-6832, 1996. [Web of Science] [Pubmed] ok

van der Meer J.R., Rollema H.S., Siezen R.J., Beerthuyzen M.M., Kuipers O.P., de Vos W.M., Influence of amino acid substitutions in the nisin leader peptide on biosynthesis and secretion of nisin by Lactococcus lactis. Journal of Biological Chemistry 269(5), pp. 3555-3562, 1994. [Web of Science] [Pubmed] ok

Leveau J.H., de Vos W.M., van der Meer J.R., Analysis of the binding site of the LysR-type transcriptional activator TcbR on the tcbR and tcbC divergent promoter sequences. Journal of Bacteriology 176(7), pp. 1850-1856, 1994. [Web of Science] [Pubmed] ok

van der Meer J.R., Bosma T.N.P., de Bruin W.P., Harms H., Holliger C., Rijnaarts H.H.M., Tros M.E., Schraa G., Zehnder A.J.B., Versatility of soil column experiments to study biodegradation of halogenated compounds under environmental conditions. Biodegradation 3(2-3), pp. 265-284, 1993. [DOI]

van der Meer J.R., Polman J., Beerthuyzen M.M., Siezen R.J., Kuipers O.P., De Vos W.M., Characterization of the Lactococcus lactis nisin A operon genes nisP, encoding a subtilisin-like serine protease involved in precursor processing, and nisR, encoding a regulatory protein involved in nisin biosynthesis. Journal of Bacteriology 175(9), pp. 2578-2588, 1993. [Web of Science] [Pubmed] ok

van der Meer J.R., Ludwi W., de Vos W.M., Characterization of a ribosomal RNA gene cluster from Clostridium tyrobutyricum: phylogenetic positioning based on the 16S and 23S nucleotide sequences. Systematic and Applied Microbiology 16(2), pp. 201-208, 1993. [DOI]

van der Meer J.R., Zehnder A.J., de Vos W.M., Identification of a novel composite transposable element, Tn5280, carrying chlorobenzene dioxygenase genes of Pseudomonas sp. strain P51. Journal of Bacteriology 173(22), pp. 7077-7083, 1991. [Web of Science] [Pubmed] ok

van der Meer J.R., Eggen R.I., Zehnder A.J., de Vos W.M., Sequence analysis of the Pseudomonas sp. strain P51 tcb gene cluster, which encodes metabolism of chlorinated catechols: evidence for specialization of catechol 1,2-dioxygenases for chlorinated substrates. Journal of Bacteriology 173(8), pp. 2425-2434, 1991. [Web of Science] [Pubmed] ok

van der Meer J.R., van Neerven A.R., de Vries E.J., de Vos W.M., Zehnder A.J., Cloning and characterization of plasmid-encoded genes for the degradation of 1,2-dichloro-, 1,4-dichloro-, and 1,2,4-trichlorobenzene of Pseudomonas sp. strain P51. Journal of Bacteriology 173(1), pp. 6-15, 1991. [Web of Science] [Pubmed] ok

van der Meer J.R., Frijters A.C., Leveau J.H., Eggen R.I., Zehnder A.J., de Vos W.M., Characterization of the Pseudomonas sp. strain P51 gene tcbR, a LysR-type transcriptional activator of the tcbCDEF chlorocatechol oxidative operon, and analysis of the regulatory region. Journal of Bacteriology 173(12), pp. 3700-3708, 1991. [Web of Science] [Pubmed] ok

Bosma T.N.P., van der Meer J.R., Schraa G., Tros M.E., Zehnder A.J.B., Reductive dechlorination of all trichloro- and dichlorobenzene isomers. FEMS Microbiology Letters 53(3-4), pp. 223-229, 1988. [DOI]

Articles - Editoriaux

van der Meer J.R., Let the sun shine. Current Opinion in Biotechnology 21(3), pp. 235-237, 2010. [DOI] [Web of Science] [Pubmed]

van der Meer J.R., Analytics with engineered bacterial bioreporter strains and systems. Current Opinion in Biotechnology 17(1), pp. 1-3, 2006. [DOI] [Web of Science] [Pubmed]

Articles - Lettres

Deepthike H.U., Tecon R., Kooten G.K., Meer J.R., Harms H., Wells M., Short J., Response to Comment on "Unlike PAHs from Exxon Valdez Crude Oil, PAHs from Gulf of Alaska Coals are not Readily Bioavailable". Environmental Science and Technology 44(6), pp. 2212-2213, 2010. [DOI] [Web of Science] [Pubmed]

Articles - Synthèses (review)

Merulla D., Buffi N., Beggah S., Truffer F., Geiser M., Renaud P., van der Meer J.R., Bioreporters and biosensors for arsenic detection. Biotechnological solutions for a world-wide pollution problem. Current Opinion in Biotechnology 24(3), pp. 534-541, 2013. [DOI] [Web of Science] [Pubmed]

van der Meer J.R., Belkin S., Where microbiology meets microengineering: design and applications of reporter bacteria. Nature Reviews. Microbiology 8(7), pp. 511-522, 2010. [DOI] [Web of Science] [Pubmed]

Czechowska K., Johnson D. R., van der Meer J. R., Use of flow cytometric methods for single-cell analysis in environmental microbiology. Current Opinion in Microbiology 11(3), pp. 205-212, 2008. [DOI] [Web of Science] [Pubmed] ok

Tecon R., van der Meer J. R., Bacterial biosensors for measuring availability of environmental pollutants. Sensors 8(7), pp. 4062-4080, 2008. [Document] [DOI] [Web of Science] ok

Juhas M., van der Meer J.R., Gaillard M., Harding R.M., Hood D.W., Crook D.W., Genomic islands: tools of bacterial horizontal gene transfer and evolution. FEMS Microbiology Reviews 33(2), pp. 376-393, 2008. [Document] [DOI] [Web of Science] [Pubmed] ok

Tecon R., van der Meer J.R., Information from single-cell bacterial biosensors: what is it good for? Current Opinion in Biotechnology 17(1), pp. 4-10, 2006. [DOI] [Web of Science] [Pubmed]

Harms H., Wells M.C., van der Meer J.R., Whole-cell living biosensors--are they ready for environmental application? Applied Microbiology and Biotechnology 70(3), pp. 273-280, 2006. [DOI] [Web of Science] [Pubmed]

van der Meer J. R., Environmental pollution promotes selection of microbial degradation pathways. Frontiers in Ecology and the Environment 4(1), pp. 35-42, 2006. [url site éditeur] ok

Tropel D., van der Meer J.R., Bacterial transcriptional regulators for degradation pathways of aromatic compounds. Microbiology and Molecular Biology Reviews 68(3), pp. 474-500, 2004. [DOI] [Web of Science] [Pubmed]

van der Meer J.R., Tropel D., Jaspers M., Illuminating the detection chain of bacterial bioreporters. Environmental Microbiology 6(10), pp. 1005-1020, 2004. [DOI] [Web of Science] [Pubmed]

van der Meer J.R., Sentchilo V., Genomic islands and the evolution of catabolic pathways in bacteria. Current Opinion in Biotechnology 14(3), pp. 248-254, 2003. [DOI] [Web of Science] [Pubmed]

van der Meer J.R., Ravatn R., Sentchilo V., The clc element of Pseudomonas sp. strain B13 and other mobile degradative elements employing phage-like integrases. Archives of Microbiology 175(2), pp. 79-85, 2001. [Web of Science] [Pubmed] ok

Power M., van der Meer J.R., Tchelet R., Egli T., Eggen R.I., Molecular-based methods can contribute to assessments of toxicological risks and bioremediation strategies. Journal of Microbiological Methods 32(2), pp. 107-119, 1998. [DOI] [Web of Science]

van der Meer J.R., Evolution of novel metabolic pathways for the degradation of chloroaromatic compounds. Antonie van Leeuwenhoek 71(1-2), pp. 159-178, 1997. [DOI] [Web of Science] [Pubmed] ok

Müller B., Wehrli B., Power M., van der Meer J.R., Structure and activity of microbial communities in sediments. Chimia 51(12), pp. 878-883, 1997. [Web of Science]

de Vos W.M., Kuipers O.P., van der Meer J.R., Siezen R.J., Maturation pathway of nisin and other lantibiotics: post-translationally modified antimicrobial peptides exported by gram-positive bacteria. Molecular Microbiology 17(3), pp. 427-437, 1995. [DOI] [Web of Science] [Pubmed] ok

van der Meer J.R., Genetic adaptation of bacteria to chlorinated aromatic compounds. FEMS Microbiology Reviews 15(2-3), pp. 239-249, 1994. [DOI] [Web of Science] [Pubmed] ok

van der Meer J.R., de Vos W.M., Harayama S., Zehnder A.J., Molecular mechanisms of genetic adaptation to xenobiotic compounds. Microbiological Reviews 56(4), pp. 677-694, 1992. [Web of Science] [Pubmed]

Livres

van der Meer J.R., Bacterial sensors: synthetic design and application principles. Synthesis Lectures on Synthetic Biology, Morgan & Claypool Publ., San Rafael, CA, 167 p., 2010. [url site éditeur] [DOI]

Parties de livre

Lacour S., Gaillard M., Van Der Meer J. R., Genomic islands and the evolution of catabolic pathways. In: Logan N. A., Lappin-Scott H. M., Oyston P. C. F. (eds.) Prokaryotic diversity : mechanisms and significance. Symposia of the Society for General Microbiology 66, Cambridge University Press, Cambridge, pp. 255-274, 2006.

van der Meer J. R., Evolution of catabolic pathways in Pseudomonas through gene transfer. In: Ramos J. L., Levesque R. C. (eds.) Pseudomonas : Molecular Biology of Emerging Issues. Springer, pp. 189-236, 2006. [DOI]

van der Meer J.R., Evolution of metabolic pathways for degradation of environmental pollutants. In: Bitton G. (eds.) Encyclopedia of environmental microbiology. Wiley, New York, pp. 1194-1207, 2002. [DOI]

Jaspers M.C.M., Totevova S., Demnerova K., Harms H., van der Meer J.R., The use of whole-cell living biosensors to determine the bioavailability of pollutants to microorganisms. In: Baveye P., Block J.-C., Goncharuk V.V. (eds.) Bioavailability of organic xenobiotics in the environment : practical consequences for the environment. NATO ASI Series 2: Environment 64, Kluwer Academic Publishers, Dordrecht, pp. 153-158, 1999.

Schraa G., van der Meer J.R., van Neerven A.R.W., Colberg P J., Zehnder A.J.B., Microbial transformation of micropollutants in soil systems. In: Jensen V., Kjøller A., Sørensen L.H. (eds.) Microbial communities in soil. FEMS Symposium 33, Elsevier, London, pp. 315-326, 1986.

Parties de livre - Chapitres

Miyazaki R., Minoia M., Pradervand N., Sentchilo V., Sulser S., Reinhard F., van der Meer J. R., The clc element and related genomic islands in Proteobacteria. In: Roberts A.P., Mullany P. (eds.) Bacterial integrative mobile genetic elements. Landes Bioscience, Madame Curie Online Database, p. 336, 01-2013. [url site éditeur]

Vogne C., Beggah S., van der Meer J. R., Random and site-directed mutagenesis of transcriptional regulator proteins implicated in hydrocarbon degradation pathways. In: Timmis K. N. (eds.) Handbook of hydrocarbon and lipid microbiology. Springer Reference 5(5), Springer, Berlin, pp. 4430-4444, 2010. [DOI]

Reinhard F., van der Meer J. R., Microcolony growth assays. In: Timmis K. N. (eds.) Handbook of hydrocarbon and lipid microbiology. Springer Reference 5(1), Springer, Berlin, pp. 3562-3570, 2010. [DOI]

Tecon R., Beggah S., van der Meer J. R., Bacterial bioreporter assays to measure hydrocarbons. In: Timmis K. N. (eds.) Handbook of hydrocarbon and lipid microbiology. Springer Reference 5(2), Springer, Berlin, pp. 3642-3652, 2010. [DOI]

Van Der Meer J. R., A genomic view on the evolution of catabolic pathways and bacterial adaptation to toxic compounds. In: Diaz E. (eds.) Microbial biodegradation : genomics and molecular biology. Caister Academic Press, Norfolk, UK, pp. 219-269, 2007.

Jaspers M.C.M., Harms H., van der Meer J.R., Prokaryotic whole-cell living bioreporters expressing bioluminescence upon the presence of bioavailable concentrations of specific pollutants: an overview. In: Fass R., Flashner Y., Reuveny S. (eds.) Novel approaches for bioremediation of organic pollution. Kluwer Academic, New York, pp. 137-149, 1998.

Thèses (doctorat)

Reinhard F. F., A single cell approach to studying ICEclc behaviour in pseudomonas., Université de Lausanne, Faculté de biologie et médecine, van der Meer J. R. (dir.), 307 p., 2014.

Coronado E., Dibenzofuran degradation by Sphingomonas wittichii RW1 under environmental stresses., Université de Lausanne, Faculté de biologie et médecine, van der Meer, J. R. (dir.), 02-2013. [Document]

Czechowska-Kusio K. R., Pollution stress on aquatic microbial communities., Université de Lausanne, Faculté de biologie et médecine, van der Meer J. R. (dir.), 209 p., 2011.

Tecon R., On the use of reporter bacteria for measuring availability of organic contaminants., Université de Lausanne, Faculté de biologie et médecine, van der Meer J. R. (dir.), 179 p., 04-2009. [Document]

ok : Revue avec comité de lecture

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