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AFFICHER LES DONNEES
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Jan Roelof Van Der Meer

Coordonnées Recherches Enseignements Publications  
Publications | Mémoires et thèses

La recherche avancée est accessible via Serval

Les publications peuvent être modifiées via MyUnil

Publications

2015

Bertelli C., Aeby S., Chassot B., Clulow J., Hilfiker O., Rappo S., Ritzmann S., Schumacher P., Terrettaz C., Benaglio P. et al., Sequencing and characterizing the genome of Estrella lausannensis as an undergraduate project: training students and biological insights. Frontiers in Microbiology 6(101), p. 101, 2015. [DOI] [Web of Science] [Pubmed] ok

Chronopoulou P.M., Sanni G.O., Silas-Olu D.I., van der Meer J.R., Timmis K.N., Brussaard C.P., McGenity T.J., Generalist hydrocarbon-degrading bacterial communities in the oil-polluted water column of the North Sea. Microbial Biotechnology 8(3), pp. 434-447, 2015. [DOI] [Web of Science] [Pubmed]

Coronado E., Valtat A., van der Meer J.R., Sphingomonas wittichii RW1 gene reporters interrogating the dibenzofuran metabolic network highlight conditions for early successful development in contaminated microcosms. Environmental Microbiology Reports 7(3), pp. 480-488, 2015. [DOI] [Web of Science] [Pubmed]

Miyazaki R., Bertelli C., Benaglio P., Canton J., De Coi N., Gharib W.H., Gjoksi B., Goesmann A., Greub G., Harshman K. et al., Comparative genome analysis of Pseudomonas knackmussii B13, the first bacterium known to degrade chloroaromatic compounds. Environmental Microbiology 17(1), pp. 91-104, 2015. [Document] [DOI] [Web of Science] [Pubmed]

Moreno-Forero S.K., van der Meer J.R., Genome-wide analysis of Sphingomonas wittichii RW1 behaviour during inoculation and growth in contaminated sand. ISME Journal 9(1), pp. 150-165, 2015. [Document] [DOI] [Web of Science] [Pubmed]

2014

Coronado E., Roggo C., van der Meer J.R., Identification of genes potentially involved in solute stress response in Sphingomonas wittichii RW1 by transposon mutant recovery. Frontiers in Microbiology 5, p. 585, 2014. [DOI] [Web of Science] [Pubmed] ok

Fida T.T., Breugelmans P., Lavigne R., van der Meer J.R., De Mot R., Vaysse P.J., Springael D., Identification of opsA, a gene involved in solute stress mitigation and survival in soil, in the polycyclic aromatic hydrocarbon-degrading bacterium Novosphingobium sp. strain LH128. Applied and Environmental Microbiology 80(11), pp. 3350-3361, 2014. [DOI] [Web of Science] [Pubmed]

Gros J., Nabi D., Würz B., Wick L.Y., Brussaard C.P., Huisman J., van der Meer J.R., Reddy C.M., Arey J.S., First day of an oil spill on the open sea: early mass transfers of hydrocarbons to air and water. Environmental Science and Technology 48(16), pp. 9400-9411, 2014. [DOI] [Web of Science] [Pubmed]

Pradervand N., Delavat F., Sulser S., Miyazaki R., van der Meer J.R., The TetR-type MfsR protein of the integrative and conjugative element (ICE) ICEclc controls both a putative efflux system and initiation of ICE transfer. Journal of Bacteriology 196(22), pp. 3971-3979, 2014. [DOI] [Web of Science] [Pubmed]

Pradervand N., Sulser S., Delavat F., Miyazaki R., Lamas I., van der Meer J.R., An operon of three transcriptional regulators controls horizontal gene transfer of the integrative and conjugative element ICEclc in Pseudomonas knackmussii B13. PLoS Genetics 10(6), p. e1004441, 2014. [Document] [DOI] [Web of Science] [Pubmed]

Reimer A., Yagur-Kroll S., Belkin S., Roy S., van der Meer J.R., Escherchia coli ribose binding protein based bioreporters revisited. Scientific Reports 4, p. 5626, 2014. [Document] [DOI] [Web of Science] [Pubmed]

Reinhard F., van der Meer J.R., Life history analysis of integrative and conjugative element activation in growing microcolonies of Pseudomonas. Journal of Bacteriology 196(7), pp. 1425-1434, 2014. [DOI] [Web of Science] [Pubmed] ok

Scheublin T.R., Deusch S., Moreno-Forero S.K., Müller J.A., van der Meer J.R., Leveau J.H., Transcriptional profiling of Gram-positive Arthrobacter in the phyllosphere: induction of pollutant degradation genes by natural plant phenolic compounds. Environmental Microbiology 16(7), pp. 2212-2225, 2014. [DOI] [Web of Science] [Pubmed]

Truffer F., Buffi N., Merulla D., Beggah S., van Lintel H., Renaud P., van der Meer J.R., Geiser M., Compact portable biosensor for arsenic detection in aqueous samples with Escherichia coli bioreporter cells. Review of Scientific Instruments 85(1), p. 015120, 2014. [DOI] [Web of Science] [Pubmed]

2013

Cortés-Salazar F., Beggah S., van der Meer J.R., Girault H.H., Electrochemical As(III) whole-cell based biochip sensor. Biosensors and Bioelectronics 47, pp. 237-242, 2013. [DOI] [Web of Science] [Pubmed]

Czechowska K., Reimmann C., van der Meer J.R., Characterization of a MexAB-OprM efflux system necessary for productive metabolism of Pseudomonas azelaica HBP1 on 2-hydroxybiphenyl. Frontiers in Microbiology 4, p. 203, 2013. [DOI] [Pubmed]

Czechowska K., Sentchilo V., Beggah S., Rey S., Seyfried M., van der Meer J.R., Examining chemical compound biodegradation at low concentrations through bacterial cell proliferation. Environmental Science and Technology 47(4), pp. 1913-1921, 2013. [DOI] [Web of Science] [Pubmed]

Merulla D., Buffi N., Beggah S., Truffer F., Geiser M., Renaud P., van der Meer J.R., Bioreporters and biosensors for arsenic detection. Biotechnological solutions for a world-wide pollution problem. Current Opinion in Biotechnology 24(3), pp. 534-541, 2013. [DOI] [Web of Science] [Pubmed]

Merulla D., Hatzimanikatis V., van der Meer J.R., Tunable reporter signal production in feedback-uncoupled arsenic bioreporters. Microbial Biotechnology 6(5), pp. 503-514, 2013. [DOI] [Web of Science] [Pubmed] ok

Miyazaki R., Minoia M., Pradervand N., Sentchilo V., Sulser S., Reinhard F., van der Meer J. R., The clc element and related genomic islands in Proteobacteria. In: Roberts A.P., Mullany P. (eds.) Bacterial integrative mobile genetic elements. Landes Bioscience, Madame Curie Online Database, p. 336, 01-2013. [url site éditeur]

Miyazaki R., van der Meer J.R., A New Large-DNA-Fragment Delivery System Based on Integrase Activity from an Integrative and Conjugative Element. Applied and Environmental Microbiology 79(14), pp. 4440-4447, 2013. [DOI] [Web of Science] [Pubmed] ok

Reinhard F., Miyazaki R., Pradervand N., van der Meer J.R., Cell differentiation to "mating bodies" induced by an integrating and conjugative element in free-living bacteria. Current Biology 23(3), pp. 255-259, 2013. [DOI] [Web of Science] [Pubmed]

Reinhard F., van der Meer J.R., Improved statistical analysis of low abundance phenomena in bimodal bacterial populations. PLoS One 8(10), p. e78288, 2013. [DOI] [Web of Science] [Pubmed]

Roggo C., Coronado E., Moreno-Forero S.K., Harshman K., Weber J., van der Meer J.R., Genome-wide transposon insertion scanning of environmental survival functions in the polycyclic aromatic hydrocarbon degrading bacterium Sphingomonas wittichii RW1. Environmental Microbiology 15(10), pp. 2681-2695, 2013. [DOI] [Web of Science] [Pubmed]

Schamfuß S., Neu T.R., van der Meer J.R., Tecon R., Harms H., Wick L.Y., Impact of mycelia on the accessibility of fluorene to PAH-degrading bacteria. Environmental Science and Technology 47(13), pp. 6908-6915, 2013. [DOI] [Web of Science] [Pubmed]

Sentchilo V., Mayer A.P., Guy L., Miyazaki R., Green Tringe S., Barry K., Malfatti S., Goessmann A., Robinson-Rechavi M., van der Meer J.R., Community-wide plasmid gene mobilization and selection. ISME Journal 7(6), pp. 1173-1186, 2013. [DOI] [Web of Science] [Pubmed]

2012

Coronado E., Roggo C., Johnson D.R., van der Meer J.R., Genome-Wide Analysis of Salicylate and Dibenzofuran Metabolism in Sphingomonas Wittichii RW1. Frontiers in Microbiology 3, p. 300, 2012. [DOI] [Pubmed]

Czechowska K., van der Meer J.R., Reversible and irreversible pollutant-induced bacterial cellular stress effects measured by ethidium bromide uptake and efflux. Environmental Science and Technology 46(2), pp. 1201-1208, 2012. [DOI] [Web of Science] [Pubmed]

Fida T.T., Breugelmans P., Lavigne R., Coronado E., Johnson D.R., van der Meer J.R., Mayer A.P., Heipieper H.J., Hofkens J., Springael D., Exposure to solute stress affects genome-wide expression but not the polycyclic aromatic hydrocarbon-degrading activity of Sphingomonas sp. strain LH128 in biofilms. Applied and Environmental Microbiology 78(23), pp. 8311-8320, 2012. [DOI] [Web of Science] [Pubmed]

Miyazaki R., Minoia M., Pradervand N., Sulser S., Reinhard F., van der Meer J.R., Cellular variability of RpoS expression underlies subpopulation activation of an integrative and conjugative element. PLoS Genetics 8(7), p. e1002818, 2012. [DOI] [Web of Science] [Pubmed] ok

Siegfried K., Endes C., Bhuiyan A.F., Kuppardt A., Mattusch J., van der Meer J.R., Chatzinotas A., Harms H., Field testing of arsenic in groundwater samples of Bangladesh using a test kit based on lyophilized bioreporter bacteria. Environmental Science and Technology 46(6), pp. 3281-3287, 2012. [DOI] [Web of Science] [Pubmed]

2011

Buffi N., Merulla D., Beutier J., Barbaud F., Beggah S., van Lintel H., Renaud P., van der Meer J.R., Development of a microfluidics biosensor for agarose-bead immobilized Escherichia coli bioreporter cells for arsenite detection in aqueous samples. Lab On A Chip 11(14), pp. 2369-2377, 2011. [DOI] [Web of Science] [Pubmed]

Buffi N., Merulla D., Beutier J., Barbaud F., Beggah S., van Lintel H., Renaud P., van der Meer J.R., Miniaturized bacterial biosensor system for arsenic detection holds great promise for making integrated measurement device. Bioengineered Bugs 2(5), pp. 296-298, 2011. [DOI] [Pubmed]

Czechowska K., van der Meer J.R., A flow cytometry based oligotrophic pollutant exposure test to detect bacterial growth inhibition and cell injury. Environmental Science and Technology 45(13), pp. 5820-5827, 2011. [DOI] [Web of Science] [Pubmed]

Fida T.T., Breugelmans P., Lavigne R., Coronado E., Johnson D., Van Der Meer J.R., Mayer A., Hofkens J., Springael D., Transcriptomic analysis of phenanthrene degrading Sphingomonas biofilms exposed to environmentally relevant solute and matric stresses. Communications in Agricultural and Applied Biological Sciences 76(1), pp. 69-72, 2011. [Pubmed]

Johnson D.R., Coronado E., Moreno-Forero S.K., Heipieper H.J., van der Meer J.R., Transcriptome and membrane fatty acid analyses reveal different strategies for responding to permeating and non-permeating solutes in the bacterium Sphingomonas wittichii. BMC Microbiology 11(1), p. 250, 2011. [DOI] [Web of Science] [Pubmed]

Kumari R., Tecon R., Beggah S., Rutler R., Arey J.S., van der Meer J.R., Development of bioreporter assays for the detection of bioavailability of long-chain alkanes based on the marine bacterium Alcanivorax borkumensis strain SK2. Environmental Microbiology 13(10), pp. 2808-2819, 2011. [DOI] [Web of Science] [Pubmed]

Miyazaki R., van der Meer J.R., A dual functional origin of transfer in the ICEclc genomic island of Pseudomonas knackmussii B13. Molecular Microbiology 79(3), pp. 743-758, 2011. [DOI] [Web of Science] [Pubmed]

Miyazaki R., van der Meer J.R., How can a dual oriT system contribute to efficient transfer of an integrative and conjugative element? Mobile Genetic Elements 1(1), pp. 82-84, 2011. [DOI] [Pubmed]

Vogne C., Bisht H., Arias S., Fraile S., Lal R., van der Meer J.R., Characterisation of the putative effector interaction site of the regulatory HbpR protein from Pseudomonas azelaica by site-directed mutagenesis. PLoS One 6(2), p. e16539, 2011. [DOI] [Web of Science] [Pubmed]

2010

Deepthike H.U., Tecon R., Kooten G.K., Meer J.R., Harms H., Wells M., Short J., Response to Comment on "Unlike PAHs from Exxon Valdez Crude Oil, PAHs from Gulf of Alaska Coals are not Readily Bioavailable". Environmental Science and Technology 44(6), pp. 2212-2213, 2010. [DOI] [Web of Science] [Pubmed]

Gaillard M., Pradervand N., Minoia M., Sentchilo V., Johnson D.R., van der Meer J.R., Transcriptome analysis of the mobile genome ICEclc in Pseudomonas knackmussii B13. BMC Microbiology 10, p. 153, 2010. [DOI] [Web of Science] [Pubmed]

Reinhard F., van der Meer J. R., Microcolony growth assays. In: Timmis K. N. (eds.) Handbook of hydrocarbon and lipid microbiology. Springer Reference 5(1), Springer, Berlin, pp. 3562-3570, 2010. [DOI]

Scheublin T.R., Sanders I.R., Keel C., van der Meer J.R., Characterisation of microbial communities colonising the hyphal surfaces of arbuscular mycorrhizal fungi. ISME Journal 4(6), pp. 752-763, 2010. [DOI] [Web of Science] [Pubmed]

Tecon R., Beggah S., Czechowska K., Sentchilo V., Chronopoulou P.M., McGenity T.J., van der Meer J.R., Development of a multistrain bacterial bioreporter platform for the monitoring of hydrocarbon contaminants in marine environments. Environmental science and technology 44(3), pp. 1049-1055, 2010. [DOI] [Web of Science] [Pubmed] ok

Tecon R., Beggah S., van der Meer J. R., Bacterial bioreporter assays to measure hydrocarbons. In: Timmis K. N. (eds.) Handbook of hydrocarbon and lipid microbiology. Springer Reference 5(2), Springer, Berlin, pp. 3642-3652, 2010. [DOI]

Tecon R., van der Meer J.R., Effect of two types of biosurfactants on phenanthrene availability to the bacterial bioreporter Burkholderia sartisoli strain RP037. Applied microbiology and biotechnology 85(4), pp. 1131-1139, 2010. [DOI] [Web of Science] [Pubmed] ok

van der Meer J.R., Let the sun shine. Current Opinion in Biotechnology 21(3), pp. 235-237, 2010. [DOI] [Web of Science] [Pubmed]

van der Meer J.R., Bacterial sensors: synthetic design and application principles. Synthesis Lectures on Synthetic Biology, Morgan & Claypool Publ., San Rafael, CA, 167 p., 2010. [url site éditeur] [DOI]

van der Meer J.R., Belkin S., Where microbiology meets microengineering: design and applications of reporter bacteria. Nature Reviews. Microbiology 8(7), pp. 511-522, 2010. [DOI] [Web of Science] [Pubmed]

Vogne C., Beggah S., van der Meer J. R., Random and site-directed mutagenesis of transcriptional regulator proteins implicated in hydrocarbon degradation pathways. In: Timmis K. N. (eds.) Handbook of hydrocarbon and lipid microbiology. Springer Reference 5(5), Springer, Berlin, pp. 4430-4444, 2010. [DOI]

2009

Deepthike H.U., Tecon R., Van Kooten G., Van der Meer J.R., Harms H., Wells M., Short J., Unlike PAHs from Exxon Valdez crude oil, PAHs from Gulf of Alaska coals are not readily bioavailable. Environmental Science and Technology 43(15), pp. 5864-5870, 2009. [DOI] [Web of Science] [Pubmed] ok

Diesel E., Schreiber M., van der Meer J.R., Development of bacteria-based bioassays for arsenic detection in natural waters. Analytical and Bioanalytical Chemistry 394(3), pp. 687-693, 2009. [DOI] [Web of Science] [Pubmed] ok

Ewis C.L., Beggah S., Pook C., Guitart C., Redshaw C., van der Meer J.R., Readman J.W., Galloway T., Novel use of a whole cell E. coli bioreporter as a urinary exposure biomarker. Environmental Science and Technology 43(2), pp. 423-428, 2009. [DOI] [Web of Science] [Pubmed] ok

Johnson D.R., Czechowska K., Chèvre N., van der Meer J.R., Toxicity of triclosan, penconazole and metalaxyl on Caulobacter crescentus and a freshwater microbial community as assessed by flow cytometry. Environmental Microbiology 11, pp. 1682-1691, 2009. [DOI] ok

Kuppardt A., Chatzinotas A., Breuer U., van der Meer J.R., Harms H., Optimization of preservation conditions of As (III) bioreporter bacteria. Applied microbiology and biotechnology 82(4), pp. 785-792, 2009. [DOI] [Web of Science] [Pubmed] ok

Sentchilo V., Czechowska K., Pradervand N., Minoia M., Miyazaki R., van der Meer J.R., Intracellular excision and reintegration dynamics of the ICEclc genomic island of Pseudomonas knackmussii sp. strain B13. Molecular microbiology 72(5), pp. 1293-1306, 2009. [DOI] [Web of Science] [Pubmed] ok

Tecon R., Binggeli O., van der Meer J.R., Double-tagged fluorescent bacterial bioreporter for the study of polycyclic aromatic hydrocarbon diffusion and bioavailability. Environmental Microbiology 11(9), pp. 2271-2283, 2009. [DOI] [Web of Science] [Pubmed]

2008

Beggah S., Vogne C., Zenaro E., Van Der Meer J.R., Mutant HbpR transcription activator isolation for 2-chlorobiphenyl via green fluorescent protein-based flow cytometry and cell sorting. Microbial Biotechnology 1(1), pp. 68-78, 2008. [DOI] [Web of Science] [Pubmed]

Czechowska K., Johnson D. R., van der Meer J. R., Use of flow cytometric methods for single-cell analysis in environmental microbiology. Current Opinion in Microbiology 11(3), pp. 205-212, 2008. [DOI] [Web of Science] [Pubmed] ok

Gaillard M., Pernet N., Vogne C., Hagenbuchle O., van der Meer J. R., Host and invader impact of transfer of the clc genomic island into Pseudomonas aeruginosa PAO1. Proceedings of the National Academy of Sciences of the United States of America 105(19), pp. 7058-7063, 2008. [DOI] [Web of Science] [Pubmed] ok

Juhas M., van der Meer J.R., Gaillard M., Harding R.M., Hood D.W., Crook D.W., Genomic islands: tools of bacterial horizontal gene transfer and evolution. FEMS Microbiology Reviews 33(2), pp. 376-393, 2008. [Document] [DOI] [Web of Science] [Pubmed] ok

Kohlmeier S., Mancuso M., Deepthike U., Tecon R., van der Meer J.R., Harms H., Wells M., Comparison of naphthalene bioavailability determined by whole-cell biosensing and availability determined by extraction with Tenax. Environmental Pollution 156(3), pp. 803-808, 2008. [Document] [DOI] [Web of Science] [Pubmed] ok

Meier C., Wehrli B., van der Meer J.R., Seasonal fluctuations of bacterial community diversity in agricultural soil and experimental validation by laboratory disturbance experiments. Microbial Ecology 56(2), pp. 210-222, 2008. [DOI] [Web of Science] [Pubmed]

Minoia M., Gaillard M., Reinhard F., Stojanov M., Sentchilo V., van der Meer J.R., Stochasticity and bistability in horizontal transfer control of a genomic island in Pseudomonas. Proceedings of the National Academy of Sciences of the United States of America 105(52), pp. 20792-20797, 2008. [Document] [DOI] [Web of Science] [Pubmed] ok

Raina V., Suar M., Singh A., Prakash O., Dadhwal M., Gupta S.K., Dogra C., Lawlor K., Lal S., van der Meer J.R. et al., Enhanced biodegradation of hexachlorocyclohexane (HCH) in contaminated soils via inoculation with Sphingobium indicum B90A. Biodegradation 19(1), pp. 27-40, 2008. [DOI] [Web of Science] [Pubmed]

Tecon R., van der Meer J. R., Bacterial biosensors for measuring availability of environmental pollutants. Sensors 8(7), pp. 4062-4080, 2008. [Document] [DOI] [Web of Science] ok

Vanlaere E., van der Meer J.R., Falsen E., Salles J.F., de Brandt E., Vandamme P., Burkholderia sartisoli sp. nov., isolated from a polycyclic aromatic hydrocarbon-contaminated soil. International Journal of Systematic and Evolutionary Microbiology 58(Pt 2), pp. 420-423, 2008. [DOI] [Web of Science] [Pubmed]

Wackwitz A., Harms H., Chatzinotas A., Breuer U., Vogne C., van der Meer J. R., Internal arsenite bioassay calibration using multiple reporter cell lines. Microbial Biotechnology 1(2), pp. 149-157, 2008. [Document] [DOI] ok

2007

Baumann B., van der Meer J.R., Analysis of bioavailable arsenic in rice with whole cell living bioreporter bacteria. Journal of Agricultural and Food Chemistry 55(6), pp. 2115-2120, 2007. [DOI] [Web of Science] [Pubmed]

Busam S., McNabb M., Wackwitz A., Senevirathna W., Beggah S., Meer J.R., Wells M., Breuer U., Harms H., Artificial neural network study of whole-cell bacterial bioreporter response determined using fluorescence flow cytometry. Analytical Chemistry 79(23), pp. 9107-9114, 2007. [DOI] [Web of Science] [Pubmed]

Kohlmeier S., Mancuso M., Tecon R., Harms H., van der Meer J.R., Wells M., Bioreporters: gfp versus lux revisited and single-cell response. Biosensors and Bioelectronics 22(8), pp. 1578-1585, 2007. [DOI] [Web of Science] [Pubmed]

Van Der Meer J. R., A genomic view on the evolution of catabolic pathways and bacterial adaptation to toxic compounds. In: Diaz E. (eds.) Microbial biodegradation : genomics and molecular biology. Caister Academic Press, Norfolk, UK, pp. 219-269, 2007.

2006

Gaillard M., Vallaeys T., Vorhölter F.J., Minoia M., Werlen C., Sentchilo V., Pühler A., van der Meer J.R., The clc element of Pseudomonas sp. strain B13, a genomic island with various catabolic properties. Journal of Bacteriology 188(5), pp. 1999-2013, 2006. [DOI] [Web of Science] [Pubmed]

Harms H., Wells M.C., van der Meer J.R., Whole-cell living biosensors--are they ready for environmental application? Applied Microbiology and Biotechnology 70(3), pp. 273-280, 2006. [DOI] [Web of Science] [Pubmed]

Lacour S., Gaillard M., Van Der Meer J. R., Genomic islands and the evolution of catabolic pathways. In: Logan N. A., Lappin-Scott H. M., Oyston P. C. F. (eds.) Prokaryotic diversity : mechanisms and significance. Symposia of the Society for General Microbiology 66, Cambridge University Press, Cambridge, pp. 255-274, 2006.

Müller T.A., Fleischmann T., van der Meer J.R., Kohler H.P., Purification and characterization of two enantioselective alpha-ketoglutarate-dependent dioxygenases, RdpA and SdpA, from Sphingomonas herbicidovorans MH. Applied and Environmental Microbiology 72(7), pp. 4853-4861, 2006. [DOI] [Web of Science] [Pubmed]

Paul D., Pandey G., Meier C., van der Meer J.R., Jain R.K., Bacterial community structure of a pesticide-contaminated site and assessment of changes induced in community structure during bioremediation. Fems Microbiology Ecology 57(1), pp. 116-127, 2006. [DOI] [Web of Science] [Pubmed]

Tecon R., van der Meer J.R., Information from single-cell bacterial biosensors: what is it good for? Current Opinion in Biotechnology 17(1), pp. 4-10, 2006. [DOI] [Web of Science] [Pubmed]

Tecon R., Wells M., van der Meer J.R., A new green fluorescent protein-based bacterial biosensor for analysing phenanthrene fluxes. Environmental Microbiology 8(4), pp. 697-708, 2006. [DOI] [Web of Science] [Pubmed]

van der Meer J. R., Environmental pollution promotes selection of microbial degradation pathways. Frontiers in Ecology and the Environment 4(1), pp. 35-42, 2006. [url site éditeur] ok

van der Meer J. R., Evolution of catabolic pathways in Pseudomonas through gene transfer. In: Ramos J. L., Levesque R. C. (eds.) Pseudomonas : Molecular Biology of Emerging Issues. Springer, pp. 189-236, 2006. [DOI]

van der Meer J.R., Analytics with engineered bacterial bioreporter strains and systems. Current Opinion in Biotechnology 17(1), pp. 1-3, 2006. [DOI] [Web of Science] [Pubmed]

2005

Harms H., Rime J., Hug S.J., van der Meer J.R., Effect of groundwater composition on arsenic detection by bacterial biosensors. Microchimica Acta 151(3-4), pp. 217-222, 2005. [DOI] [Web of Science] ok

Suar M., Hauser A., Poiger T., Buser H.R., Müller M.D., Dogra C., Raina V., Holliger C., van der Meer J.R., Lal R. et al., Enantioselective transformation of alpha-hexachlorocyclohexane by the dehydrochlorinases LinA1 and LinA2 from the soil bacterium Sphingomonas paucimobilis B90A. Applied and Environmental Microbiology 71(12), pp. 8514-8518, 2005. [DOI] [Web of Science] [Pubmed]

Trang P.T., Berg M., Viet P.H., Van Mui N., Van Der Meer J.R., Bacterial bioassay for rapid and accurate analysis of arsenic in highly variable groundwater samples. Environmental Science and Technology 39(19), pp. 7625-7630, 2005. [DOI] [Web of Science] [Pubmed]

Tropel D., van der Meer J.R., Characterization of HbpR binding by site-directed mutagenesis of its DNA-binding site and by deletion of the effector domain. FEBS Journal 272(7), pp. 1756-1766, 2005. [DOI] [Web of Science] [Pubmed]

Wells M., Gösch M., Harms H., Van Der Meer J. R., Response characteristics of arsenic-sensitive bioreporters expressing the gfp reporter gene. Microchimica Acta 151(3-4), pp. 209-216, 2005. [DOI] [Web of Science] ok

Wells M., Gösch M., Rigler R., Harms H., Lasser T., van der Meer J.R., Ultrasensitive reporter protein detection in genetically engineered bacteria. Analytical Chemistry 77(9), pp. 2683-2689, 2005. [DOI] [Web of Science] [Pubmed]

2004

Brendan Logue J., Robinson C.T., Meier C., Van Der Meer J.R., Relationship between sediment organic matter, bacteria composition, and the ecosystem metabolism of alpine streams. Limnology and Oceanography 49(6), pp. 2001-2010, 2004. [Web of Science] ok

Dogra C., Raina V., Pal R., Suar M., Lal S., Gartemann K.H., Holliger C., van der Meer J.R., Lal R., Organization of lin genes and IS6100 among different strains of hexachlorocyclohexane-degrading Sphingomonas paucimobilis: evidence for horizontal gene transfer. Journal of Bacteriology 186(8), pp. 2225-2235, 2004. [DOI] [Pubmed]

Laemmli C., Werlen C., van der Meer J.R., Mutation analysis of the different tfd genes for degradation of chloroaromatic compounds in Ralstonia eutropha JMP134. Archives of Microbiology 181(2), pp. 112-121, 2004. [DOI] [Web of Science] [Pubmed]

Müller T.A., Byrde S.M., Werlen C., van der Meer J.R., Kohler H.P., Genetic analysis of phenoxyalkanoic acid degradation in Sphingomonas herbicidovorans MH. Applied and Environmental Microbiology 70(10), pp. 6066-6075, 2004. [DOI] [Web of Science] [Pubmed]

Suar M., van der Meer J.R., Lawlor K., Holliger C., Lal R., Dynamics of multiple lin gene expression in Sphingomonas paucimobilis B90A in response to different hexachlorocyclohexane isomers. Applied and Environmental Microbiology 70(11), pp. 6650-6656, 2004. [DOI] [Web of Science] [Pubmed]

Tropel D., Bähler A., Globig K., van der Meer J.R., Design of new promoters and of a dual-bioreporter based on cross-activation by the two regulatory proteins XylR and HbpR. Environmental Microbiology 6(11), pp. 1186-1196, 2004. [DOI] [Web of Science] [Pubmed]

Tropel D., van der Meer J.R., Bacterial transcriptional regulators for degradation pathways of aromatic compounds. Microbiology and Molecular Biology Reviews 68(3), pp. 474-500, 2004. [DOI] [Web of Science] [Pubmed]

van der Meer J.R., Tropel D., Jaspers M., Illuminating the detection chain of bacterial bioreporters. Environmental Microbiology 6(10), pp. 1005-1020, 2004. [DOI] [Web of Science] [Pubmed]

Werlen C., Jaspers M.C., van der Meer J.R., Measurement of biologically available naphthalene in gas and aqueous phases by use of a Pseudomonas putida biosensor. Applied and Environmental Microbiology 70(1), pp. 43-51, 2004. [DOI] [Web of Science] [Pubmed]

2003

Egli K., Bosshard F., Werlen C., Lais P., Siegrist H., Zehnder A.J., Van der Meer J.R., Microbial composition and structure of a rotating biological contactor biofilm treating ammonium-rich wastewater without organic carbon. Microbial Ecology 45(4), pp. 419-432, 2003. [DOI] [Web of Science] [Pubmed]

Egli K., Langer C., Siegrist H.R., Zehnder A.J., Wagner M., van der Meer J.R., Community analysis of ammonia and nitrite oxidizers during start-up of nitritation reactors. Applied and Environmental Microbiology 69(6), pp. 3213-3222, 2003. [DOI] [Web of Science] [Pubmed]

ok : Revue avec comité de lecture

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