Luca Fumagalli

Publications | Mémoires et thèses

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78 publications

2019 | 2018 | 2017 | 2016 | 2015 | 2014 | 2013 | 2012 | 2011 | 2010 | 2009 | 2008 | 2007 | 2006 | 2004 | 2003 | 2002 | 2000 | 1999 | 1998 | 1997 | 1996 | 1994 | 1991 |
 
Diversification and speciation in tree frogs from the Maghreb (Hyla meridionalis sensu lato), with description of a new African endemic.
Dufresnes C., Beddek M., Skorinov D.V., Fumagalli L., Perrin N., Crochet P.A., Litvinchuk S.N., 2019/05. Molecular Phylogenetics and Evolution, 134 pp. 291-299. Peer-reviewed.
 
DNA metabarcoding-Need for robust experimental designs to draw sound ecological conclusions.
Zinger L., Bonin A., Alsos I.G., Bálint M., Bik H., Boyer F., Chariton A.A., Creer S., Coissac E., Deagle B.E. et al., 2019/04. Molecular Ecology, 28 (8) pp. 1857-1862. Peer-reviewed.
 
Last but not beast: the fall of the Alpine wolves told by historical DNA
Dufresnes C., Miquel C., Taberlet P., Fumagalli L., 2019/03/25. Mammal Research. Peer-reviewed.
Two decades of non-invasive genetic monitoring of the grey wolves recolonizing the Alps support very limited dog introgression.
Dufresnes C., Remollino N., Stoffel C., Manz R., Weber JM, Fumagalli L., 2019/01/16. Scientific Reports, 9 (1) p. 148. Peer-reviewed.
 
Early detection and spatial monitoring of an emerging biological invasion by population genetics and eDNA metabarcoding
Dufresnes C., Déjean T., Zumbach S., Schmidt B., Fumagalli L., Ramseier P., Dubey S., 2019. Conservation Science and Practice, 1 pp. e86. Peer-reviewed.
 
Comprehensive molecular phylogeny of barn owls and relatives (Family: Tytonidae), and their six major Pleistocene radiations.
Uva V., Päckert M., Cibois A., Fumagalli L., Roulin A., 2018/08. Molecular phylogenetics and evolution, 125 pp. 127-137. Peer-reviewed.
 
Lack of evidence for selection favouring MHC haplotypes that combine high functional diversity.
Gaigher A., Roulin A., Gharib W.H., Taberlet P., Burri R., Fumagalli L., 2018/05. Heredity, 120 (5) pp. 396-406. Peer-reviewed.
 
Howling from the past: historical phylogeography and diversity losses in European grey wolves.
Dufresnes C., Miquel C., Remollino N., Biollaz F., Salamin N., Taberlet P., Fumagalli L., 2018. Proceedings of the Royal Society B. Biological sciences, 285 (1884) p. 20181148. Peer-reviewed.
100 million years of multigene family evolution: origin and evolution of the avian MHC class IIB.
Goebel J., Promerová M., Bonadonna F., McCoy K.D., Serbielle C., Strandh M., Yannic G., Burri R., Fumagalli L., 2017. BMC Genomics, 18 (1) p. 460. Peer-reviewed.
Broad-Scale Genetic Diversity of Cannabis for Forensic Applications.
Dufresnes C., Jan C., Bienert F., Goudet J., Fumagalli L., 2017. PloS one, 12 (1) pp. e0170522. Peer-reviewed.
 
Climatic niche evolution is faster in sympatric than allopatric lineages of the butterfly genus Pyrgus.
Pitteloud C., Arrigo N., Suchan T., Mastretta-Yanes A., Vila R., Dincă V., Hernández-Roldán J., Brockmann E., Chittaro Y., Kleckova I. et al., 2017. Proceedings of the Royal Society B. Biological sciences, 284 (1852) p. 20170208. Peer-reviewed.
Stocking activities for the Arctic charr in Lake Geneva: Genetic effects in space and time.
Savary R., Dufresnes C., Champigneulle A., Caudron A., Dubey S., Perrin N., Fumagalli L., 2017. Ecology and Evolution, 7 (14) pp. 5201-5211. Peer-reviewed.
 
Family-assisted inference of the genetic architecture of major histocompatibility complex variation.
Gaigher A., Burri R., Gharib W.H., Taberlet P., Roulin A., Fumagalli L., 2016/04. Molecular ecology resources, 16 (6) pp. 1353-1364. Peer-reviewed.
 
Decades of population genetic research reveal the need for harmonization of molecular markers: the grey wolf Canis lupus as a case study
de Groot GA. , Nowak C., Skrbinsek T., Andersen LW., Aspi J., Fumagalli L., Godinho R., Harms V., Jansman HAH., Liberg O. et al., 2016. Mammal Review, 46 (1) pp. 44-59. Peer-reviewed.
Detection of Invasive Mosquito Vectors Using Environmental DNA (eDNA) from Water Samples.
Schneider J., Valentini A., Dejean T., Montarsi F., Taberlet P., Glaizot O., Fumagalli L., 2016. PloS one, 11 (9) pp. e0162493. Peer-reviewed.
Effects of host genetics and environment on egg-associated microbiotas in brown trout (Salmo trutta).
Wilkins L.G.E., Fumagalli L., Wedekind C., 2016. Molecular Ecology, 25 (19) pp. 4930-4945. Peer-reviewed.
 
Massive genetic introgression in threatened northern crested newts (Triturus cristatus) by an invasive congener (T. carnifex) in Western Switzerland
Dufresnes C., Pellet J., Bettinelli-Riccardi S., Thiébaud J., Perrin N., Fumagalli L., 2016. Conservation Genetics, 17 (4) pp. 839-846. Peer-reviewed.
Polymorphic DNA microsatellite markers for forensic individual identification and parentage analyses of seven threatened species of parrots (family Psittacidae).
Jan C., Fumagalli L., 2016. Peerj, 4 pp. e2416. Peer-reviewed.
The genetic basis of color-related local adaptation in a ring-like colonization around the Mediterranean.
Burri R., Antoniazza S., Gaigher A., Ducrest A.L., Simon C., European Barn Owl Network, Fumagalli L., Fumagalli L., Goudet J., Roulin A., 2016. Evolution; International Journal of Organic Evolution, 70 (1) pp. 140-153. Peer-reviewed.
 
Declining diversity of egg-associated bacteria during development of naturally spawned whitefish embryos (Coregonus spp.)
Wilkins L.G.E., Rogivue A., Fumagalli L., Wedekind C., 2015. Aquatic Sciences, 77 (3) pp. 481-497. Peer-reviewed.
 
Embryonic gene expression of Coregonus palaea (whitefish) under pathogen stress as analyzed by high-throughput RNA-sequencing.
Wilkins L.G., Clark E.S., Farinelli L., Wedekind C., Fumagalli L., 2015. Fish and Shellfish Immunology, 47 (1) pp. 130-140. Peer-reviewed.
 
Genetic consequences of population expansions and contractions in the common hippopotamus (Hippopotamus amphibius) since the Late Pleistocene.
Stoffel C., Dufresnes C., Okello J.B., Noirard C., Joly P., Nyakaana S., Muwanika V.B., Alcala N., Vuilleumier S., Siegismund H.R. et al., 2015. Molecular Ecology, 24 (10) pp. 2507-2520. Peer-reviewed.
Increased diversity of egg-associated bacteria on brown trout (Salmo trutta) at elevated temperatures.
Wilkins L.G., Rogivue A., Schütz F., Fumagalli L., Wedekind C., 2015. Scientific Reports, 5 p. 17084. Peer-reviewed.
 
The role of geography and ecology in shaping repeated patterns of morphological and genetic differentiation between European minnows (Phoxinus phoxinus) from the Pyrenees and the Alps
Collin H., Fumagalli L., 2015. Biological Journal of the Linnean Society, 116 (3) pp. 691-703. Peer-reviewed.
Genetic identity of the critically endangered Wimmer's shrew Crocidura wimmeri
Vogel P., Vogel V., Fumagalli L., Kadjo B., Kouadio R.Y., Dubey S., 2014. Biological Journal of the Linnean Society, 111 (1) pp. 224-229.
 
PCR-based isolation of multigene families: lessons from the avian MHC class IIB.
Burri R., Promerová M., Goebel J., Fumagalli L., 2014. Molecular Ecology Resources, 14 (4) pp. 778-788.
Combining molecular evolution and environmental genomics to unravel adaptive processes of MHC class IIB diversity in European minnows (Phoxinus phoxinus)
Collin H., Burri R., Comtesse F., Fumagalli L., 2013. Ecology and Evolution, 3 (8) pp. 2568-2585. Peer-reviewed.
High prevalence and lineage diversity of avian malaria in wild populations of great tits (Parus major) and mosquitoes (Culex pipiens).
Glaizot O., Fumagalli L., Iritano K., Lalubin F., Van Rooyen J., Christe P., 2012. PLoS One, 7 (4) pp. e34964. Peer-reviewed.
Local adaptation and matching habitat choice in female barn owls with respect to melanic coloration.
Dreiss A.N., Antoniazza S., Burri R., Fumagalli L., Sonnay C., Frey C., Goudet J., Roulin A., 2012. Journal of Evolutionary Biology, 25 (1) pp. 103-114. Peer-reviewed.
Massive nest-box supplementation boosts fecundity, survival and even immigration without altering mating and reproductive behaviour in a rapidly recovered bird population.
Berthier K., Leippert F., Fumagalli L., Arlettaz R., 2012. Plos One, 7 (4) pp. e36028. Peer-reviewed.
 
Nonspecific PCR amplification by high-fidelity polymerases: implications for next-generation sequencing of AFLP markers.
Brelsford A., Collin H., Perrin N., Fumagalli L., 2012. Molecular Ecology Resources, 12 (1) pp. 123-127. Peer-reviewed.
 
Sex-specific estimates of dispersal show female philopatry and male dispersal in a promiscuous amphibian, the alpine salamander (Salamandra atra).
Helfer V., Broquet T., Fumagalli L., 2012. Molecular Ecology, 21 (19) pp. 4706-4720. Peer-reviewed.
 
Twofold cost of reproduction: an increase in parental effort leads to higher malarial parasitaemia and to a decrease in resistance to oxidative stress.
Christe P., Glaizot O., Strepparava N., Devevey G., Fumagalli L., 2012. Proceedings of the Royal Society B Biological Sciences, 279 (1731) pp. 1142-1149. Peer-reviewed.
 
Identification des traces de grands prédateurs par des techniques de biologie moléculaire
Fumagalli L., 2011/02., Présentation orale pour un colloque du Centre Universitaire Romand de Médecine Légale (CURML), Lausanne, 23 février 2011.
 
Evidence for morphological and adaptive genetic divergence between lake and stream habitats in European minnows (Phoxinus phoxinus, Cyprinidae).
Collin H., Fumagalli L., 2011. Molecular Ecology, 20 (21) pp. 4490-4502. Peer-reviewed.
Landscape genetics of the Alpine newt (Mesotriton alpestris) inferred from a strip-based approach
Emaresi G., Pellet J., Dubey S., Hirzel A.H., Fumagalli L., 2011. Conservation Genetics, 12 (1) pp. 41-50. Peer-reviewed.
 
Adaptive divergence of ancient gene duplicates in the avian MHC class II beta.
Burri R., Salamin N., Studer R.A., Roulin A., Fumagalli L., 2010. Molecular Biology and Evolution, 27 (10) pp. 2360-2374. Peer-reviewed.
 
Local adaptation maintains clinal variation in melanin-based coloration of European barn owls (Tyto alba).
Antoniazza S., Burri R., Fumagalli L., Goudet J., Roulin A., 2010. Evolution, 64 (7) pp. 1944-1954. Peer-reviewed.
Genetic differentiation in two European tree frog (Hyla arborea) metapopulations in contrasted landscapes of Western Switzerland
Dubey S., Ursenbacher S., Pellet J., Fumagalli L., 2009. Amphibia-Reptilia, 30 (1) pp. 127-133. Peer-reviewed.
 
Limited genetic diversity and high differentiation among the remnant adder (Vipera berus) populations in the Swiss and French Jura Mountains
Ursenbacher S., Monney J.C., Fumagalli L., 2009. Conservation Genetics, 10 (2) pp. 303-315. Peer-reviewed.
Male reproductive success and multiple paternity in wild, low-density populations of the adder (Vipera berus).
Ursenbacher S., Erny C., Fumagalli L., 2009. Journal of Heredity, 100 (3) pp. 365-370. Peer-reviewed.
 
Simultaneous identification of multiple mammalian species from mixed forensic samples based on mtDNA control region length polymorphism
Fumagalli L., Jan Cabrita C., Castella V., 2009. Forensic Science International : Genetics Supplement Series, 2 (1) pp. 302-303. Peer-reviewed.
 
Species identification in mammals from mixed biological samples based on mitochondrial DNA control region length polymorphism.
Pun K.M., Albrecht C., Castella V., Fumagalli L., 2009. Electrophoresis, 30 (6) pp. 1008-1014. Peer-reviewed.
 
Evolutionary patterns of MHC class II B in owls and their implications for the understanding of avian MHC evolution.
Burri R., Niculita Hirzel Hélène, Salamin N., Roulin A., Fumagalli L., 2008/06. Molecular Biology and Evolution, 25 (6) pp. 1180-1191. Peer-reviewed.
 
Das Auerhuhn im Jura: Qualität des Lebensraum, Demographie, Habitatwahl und nicht-invasive genetische Untersuchungen
Sachot S., Fumagalli L., Mollet P., 2008. Der Ornithologische Beobachter, 105 (1) pp. 97-106. Peer-reviewed.
 
Identification génétique de l'espèce
Fumagalli L., 2008. pp. 13-25 dans Marchesi P., Blant M., Capt S. (eds.) Mammifères de Suisse : Clés de détermination, CSCF & SSBF.
Isolation and characterization of 21 microsatellite markers in the barn owl (Tyto alba).
Burri R., Antoniazza S., Siverio F., Klein A., Roulin A., Fumagalli L., 2008. Molecular Ecology Resources, 8 (5) pp. 977-979. Peer-reviewed.
 
Isolation and characterization of major histocompatibility complex (MHC) class II B genes in the Barn owl (Aves: Tyto alba)
Burri R., Niculita-Hirzel Hélène, Roulin A., Fumagalli L., 2008. Immunogenetics, 60 (9) pp. 543-550. Peer-reviewed.
 
Molecular phylogeography of the nose-horned viper (Vipera ammodytes, Linnaeus (1758)): evidence for high genetic diversity and multiple refugia in the Balkan peninsula
Ursenbacher S., Schweiger S., Tomovic L., Crnobrnja-Isailovic J., Fumagalli L., Mayer W., 2008. Molecular Phylogenetics and Evolution, 46 (3) pp. 1116-1128. Peer-reviewed.
 
Buccal swabs allow efficient and reliable microsatellite genotyping in amphibians
Broquet T., Berset-Braendli L., Emaresi G., Fumagalli L., 2007. Conservation Genetics, 8 (2) pp. 509-511. Peer-reviewed.
 
From the Apennines to the Alps: colonization genetics of the naturally expanding Italian wolf (Canis lupus) population
Fabbri E., Miquel C., Lucchini V., Santini A., Caniglia R., Duchamp C., Weber J. M., Lequette B., Marucco F., Boitani L. et al., 2007. Molecular Ecology, 16 (8) pp. 1661-1671. Peer-reviewed.
 
DNA degradation in avian faecal samples and feasibility of non-invasive genetic studies applied to threatened capercaillie populations
Regnaut S., Lucas F. S., Fumagalli L., 2006. Conservation Genetics, 7 (3) pp. 449-453. Peer-reviewed.
Genotyping faeces reveals facultative kin association on capercaillie's leks
Regnaut S., Christe P., Chapuisat M., Fumagalli L., 2006. Conservation Genetics, 7 (5) pp. 665-674. Peer-reviewed.
Origine des populations de rainette verte (Hyla spp.) de l'ouest de la Suisse
Dubey S., Ursenbacher S., Fumagalli L., 2006. Revue Suisse de Zoologie, 113 (4) pp. 879-887. Peer-reviewed.
 
Phylogeography and Pleistocene refugia of the adder (Vipera berus) as inferred from mitochondrial DNA sequence data.
Ursenbacher S., Carlsson M., Helfer V., Tegelström H., Fumagalli L., 2006. Molecular Ecology, 15 (11) pp. 3425-3437. Peer-reviewed.
 
Phylogeography of the asp viper (Vipera aspis) inferred from mitochondrial DNA sequence data: evidence for multiple Mediterranean refugial areas
Ursenbacher S., Conelli A., Golay P., Monney J. C., Zuffi M. A., Thiery G., Durand T., Fumagalli L., 2006. Molecular Phylogenetics and Evolution, 38 (2) pp. 546-552. Peer-reviewed.
 
Ultraviolet reflectance in a melanin-based plumage trait is heritable
Py I., Ducrest A. L., Duvoisin N., Fumagalli L., Roulin A., 2006. Evolutionary Ecology Research, 8 (3) pp. 483-491. Peer-reviewed.
Arbuscular mycorrhizal fungi (Glomeromycota) harbour ancient fungal tubulin genes that resemble those of the chytrids (Chytridiomycota).
Corradi N., Hijri M., Fumagalli L., Sanders I.R., 2004. Fungal Genetics and Biology, 41 (11) pp. 1037-1045. Peer-reviewed.
 
High genetic variability and low local diversity in a population of arbuscular mycorrhizal fungi.
Koch A.M., Kuhn G., Fontanillas P., Fumagalli L., Goudet J., Sanders I.R., 2004. Proceedings of the National Academy of Sciences of the United States of America, 101 (8) pp. 2369-2374. Peer-reviewed.
 
Are there two species of Pygmy Shrews (Sorex)? Revisiting the question using DNA sequence data
Stewart D. T., McPherson M., Robichaud J., Fumagalli L., 2003. Canadian Field-Naturalist, 117 (1) pp. 82-88. Peer-reviewed.
 
Long-distance wolf recolonization of France and Switzerland inferred from non-invasive genetic sampling over a period of 10 years
Valiere N., Fumagalli L., Gielly L., Miquel C., Lequette B., Poulle M. L., Weber J. M., Arlettaz R., Taberlet P., 2003. Animal Conservation, 6 (1) pp. 83-92. Peer-reviewed.
Elaboration d 'un protocole de routine pour l'identification génétique de mammifères sauvages (gibier) à partir d 'échantillons biologiques
Fumagalli L., 2002/04. 11, Service des Forêts, de la Faune et de la Nature, Etat de Vaud.
 
A taxonomical re-evaluation of the Valais chromosome race of the common shrew Sorex araneus (Insectivora: Soricidae)
Brünner H., Lugon-Moulin N., Balloux F., Fumagalli L., Hausser J., 2002. Acta Theriologica, 47 (3) pp. 245-275. Peer-reviewed.
 
Extreme genetic differentiation among the remnant populations of marble trout (Salmo marmoratus) in Slovenia.
Fumagalli L., Snoj A., Jesensek D., Balloux F., Jug T., Duron O., Brossier F., Crivelli A.J., Berrebi P., 2002. Molecular Ecology, 11 (12) pp. 2711-2716. Peer-reviewed.
 
The maritime shrew, Sorex maritimensis (Insectivora : Soricidae): a newly recognized Canadian endemic.
Stewart D.T., Perry N. D., Fumagalli L., 2002. Canadian Journal of Zoology, 80 (1) pp. 94-99. Peer-reviewed.
 
The evolution of the thyroid hormone distributor protein transthyretin in the order insectivora, class mammalia.
Prapunpoj P., Richardson S.J., Fumagalli L., Schreiber G., 2000. Molecular Biology and Evolution, 17 (8) pp. 1199-1209. Peer-reviewed.
 
Mitochondrial DNA sequence variation within the remnant populations of the endangered numbat (Marsupialia: Myrmecobiidae: Myrmecobius fasciatus).
Fumagalli L., Moritz C., Taberlet P., Friend J.A., 1999. Molecular Ecology, 8 (9) pp. 1545-1549. Peer-reviewed.
 
Molecular phylogeny and evolution of Sorex shrews (Soricidae: insectivora) inferred from mitochondrial DNA sequence data.
Fumagalli L., Taberlet P., Stewart D.T., Gielly L., Hausser J., Vogel P., 1999. Molecular Phylogenetics and Evolution, 11 (2) pp. 222-235. Peer-reviewed.
 
Comparative phylogeography and postglacial colonization routes in Europe.
Taberlet P., Fumagalli L., Wust Saucy A.G., Cosson J.F., 1998. Molecular Ecology, 7 (4) pp. 453-464. Peer-reviewed.
Microsatellite conservation, polymorphism, and GC content in shrews of the genus Sorex (Insectivora, Mammalia)
Balloux F., Ecoffey E., Fumagalli L., Goudet J., Wyttenbach A., Hausser J., 1998. Molecular Biology and Evolution, 15 (4) pp. 473-475. Peer-reviewed.
 
Mitochondrial DNA evolution in shrews
Hausser J., Fumagalli L., Taberlet P., 1998. pp. 295-308 dans Wojcik J. M., Wolsan M. (eds.) The Evolution of Shrews chap. 10, Mammal Research Institute, Polish Academy of Sciences.
 
Versatile primers for the amplification of the mitochondrial DNA control region in marsupials.
Fumagalli L., Pope L.C., Taberlet P., Moritz C., 1997. Molecular Ecology, 6 (12) pp. 1199-1201. Peer-reviewed.
 
Genetic structure of Gymnures (genus Hylomys; Erinaceidae) on continental islands of Southeast Asia: Historical effects of fragmentation
Ruedi M., Fumagalli L., 1996. Journal of Zoological Systematics and Evolutionary Research, 34 (3) pp. 153-162. Peer-reviewed.
 
Origin and evolution of homologous repeated sequences in the mitochondrial DNA control region of shrews.
Fumagalli L., Taberlet P., Favre L., Hausser J., 1996. Molecular Biology and Evolution, 13 (1) pp. 31-46.
 
Owl pellets as a source of DNA for genetic studies of small mammals.
Taberlet P., Fumagalli L., 1996. Molecular Ecology, 5 (2) pp. 301-305. Peer-reviewed.
 
Phylogenetic structures of the Holarctic Sorex araneus group and its relationships with S-samniticus, as inferred from mtDNA sequences
Fumagalli L., Hausser J., Taberlet P., Gielly L., Stewart D. T., 1996. Hereditas, 125 (2-3) pp. 191-199. Peer-reviewed.
 
Chromosomal versus mitochondrial DNA evolution: tracking the evolutionary history of the southwestern european populations of the Sorex araneus group (Mammalia Insectivora)
Taberlet P., Fumagalli L., Hausser J., 1994. Evolution, 48 (3) pp. 623-636. Peer-reviewed.
 
mtDNA comparison of the Alpine chromosomal races and species of the Sorex araneus group: preliminary results
Taberlet P., Fumagalli L., Hausser J., 1991., Proceedings of ISACC's Second International Meeting pp. 107-118 dans Hausser J. (eds.) The cytogenetics of the Sorex araneus group and related topics, Mémoires de la Société Vaudoise de Sciences Naturelles. Peer-reviewed, SVSN.
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