Department of Fundamental Microbiology

Publications | Phd and Masters theses

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793 publications

In press | 2020 | 2019 | 2018 | 2017 | 2016 | ...
 
Proton Motive Force Disruptors Block Bacterial Competence and Horizontal Gene Transfer.
Domenech A., Brochado A.R., Sender V., Hentrich K., Henriques-Normark B., Typas A., Veening J.W. Cell host & microbe. Peer-reviewed.
 
HdaB: a novel and conserved DnaA-related protein that targets the RIDA process to stimulate replication initiation.
Frandi A., Collier J. Nucleic acids research. Peer-reviewed.
Draft Genome Sequence of Pseudomonas sp. Strain LD120, Isolated from the Marine Alga Saccharina latissima
Heiman Clara Margot, Wiese Jutta, Kupferschmied Peter, Maurhofer Monika, Keel Christoph, Vacheron Jordan, 2020/02/20. Microbiology Resource Announcements, 9 (8).
 
Characterization and mutagenesis of Chinese hamster ovary cells endogenous retroviruses to inactivate viral particle release.
Duroy P.O., Bosshard S., Schmid-Siegert E., Neuenschwander S., Arib G., Lemercier P., Masternak J., Roesch L., Buron F., Girod P.A. et al., 2020/02. Biotechnology and bioengineering, 117 (2) pp. 466-485. Peer-reviewed.
 
Influence of cytoskeleton organization on recombinant protein expression by CHO cells.
Pourcel L., Buron F., Arib G., Le Fourn V., Regamey A., Bodenmann I., Girod P.A., Mermod N., 2020/01/20. Biotechnology and bioengineering. Peer-reviewed.
 
Overexpression of transcription factor Foxa1 and target genes remediates therapeutic protein production bottlenecks in Chinese hamster ovary cells.
Berger A., Le Fourn V., Masternak J., Regamey A., Bodenmann I., Mermod N., 2020/01/20. Biotechnology and bioengineering. Peer-reviewed.
 
A toolbox of stable integration vectors in the fission yeast Schizosaccharomyces pombe
Vještica Aleksandar, Marek Magdalena, Nkosi Pedro Junior, Merlini Laura, Liu Gaowen, Bérard Melvin, Billault-Chaumartin Ingrid, Martin Sophie G., 2020/01/01. Journal of Cell Science, 133 (1) pp. jcs240754. Peer-reviewed.
 
BactMAP: An R package for integrating, analyzing and visualizing bacterial microscopy data.
van Raaphorst R., Kjos M., Veening J.W., 2020/01. Molecular microbiology, 113 (1) pp. 297-308. Peer-reviewed.
Changing the biological Rosetta stone: the (commercial) potential of recoded microbes.
Santos-Moreno J., Schaerli Y., 2020/01. Microbial biotechnology, 13 (1) pp. 11-13.
 
Mechanistic insights into bacterial metabolic reprogramming from omics-integrated genome-scale models.
Hadadi N., Pandey V., Chiappino-Pepe A., Morales M., Gallart-Ayala H., Mehl F., Ivanisevic J., Sentchilo V., Meer JRV, 2020. NPJ systems biology and applications, 6 p. 1. Peer-reviewed.
 
The conserved transcriptional regulator CdnL is required for metabolic homeostasis and morphogenesis in Caulobacter.
Woldemeskel S.A., Daitch A.K., Alvarez L., Panis G., Zeinert R., Gonzalez D., Smith E., Collier J., Chien P., Cava F. et al., 2020/01. PLoS genetics, 16 (1) pp. e1008591. Peer-reviewed.
The co‐evolution of longevity and social life
Lucas E R., Keller L., 2020/01. Functional Ecology, 34 (1) pp. 76-87.
 
Characterization of mesoangioblast cell fate and improved promyogenic potential of a satellite cell-like subpopulation upon transplantation in dystrophic murine muscles.
Mavoungou L.O., Neuenschwander S., Pham U., Iyer P.S., Mermod N., 2019/12. Stem cell research, 41 p. 101619. Peer-reviewed.
 
Efficacy of newly isolated and highly potent bacteriophages in a mouse model of extensively drug-resistant Acinetobacter baumannii bacteraemia.
Leshkasheli L., Kutateladze M., Balarjishvili N., Bolkvadze D., Save J., Oechslin F., Que Y.A., Resch G., 2019/12. Journal of global antimicrobial resistance, 19 pp. 255-261. Peer-reviewed.
 
Self-organization of parS centromeres by the ParB CTP hydrolase.
Soh Y.M., Davidson I.F., Zamuner S., Basquin J., Bock F.P., Taschner M., Veening J.W., De Los Rios P., Peters J.M., Gruber S., 2019/11/29. Science, 366 (6469) pp. 1129-1133. Peer-reviewed.
Controlling spatiotemporal pattern formation in a concentration gradient with a synthetic toggle switch
Içvara Barbier, Rubén Perez Carrasco, Yolanda Schaerli, 2019/11/21. bioRxiv.
 
Bacteriophages Improve Outcomes in Experimental Staphylococcus aureus Ventilator-associated Pneumonia.
Prazak J., Iten M., Cameron D.R., Save J., Grandgirard D., Resch G., Goepfert C., Leib S.L., Takala J., Jakob S.M. et al., 2019/11/01. American journal of respiratory and critical care medicine, 200 (9) pp. 1126-1133. Peer-reviewed.
Capping Protein Insulates Arp2/3-Assembled Actin Patches from Formins.
Billault-Chaumartin I., Martin S.G., 2019/10/07. Current biology, 29 (19) pp. 3165-3176.e6. Peer-reviewed.
 
Draft Genome Sequence of Methicillin-Resistant Staphylococcus aureus Strain AW7, Isolated from a Patient with Bacteremia.
Cameron D.R., Ramette A., Prazak J., Entenza J., Haenggi M., Que Y.A., Resch G., 2019/10/03. Microbiology resource announcements, 8 (40). Peer-reviewed.
 
A role for alternative end-joining factors in homologous recombination and genome editing in Chinese hamster ovary cells.
Bosshard S., Duroy P.O., Mermod N., 2019/10. DNA repair, 82 p. 102691. Peer-reviewed.
 
RocS drives chromosome segregation and nucleoid protection in Streptococcus pneumoniae.
Mercy C., Ducret A., Slager J., Lavergne J.P., Freton C., Nagarajan S.N., Garcia P.S., Noirot-Gros M.F., Dubarry N., Nourikyan J. et al., 2019/10. Nature microbiology, 4 (10) pp. 1661-1670. Peer-reviewed.
 
SosA inhibits cell division in Staphylococcus aureus in response to DNA damage.
Bojer M.S., Wacnik K., Kjelgaard P., Gallay C., Bottomley A.L., Cohn M.T., Lindahl G., Frees D., Veening J.W., Foster S.J. et al., 2019/10. Molecular microbiology, 112 (4) pp. 1116-1130. Peer-reviewed.
Updated Genome Sequence and Annotation for the Full Genome of Pseudomonas protegens CHA0.
Smits THM, Rezzonico F., Frasson D., Vesga P., Vacheron J., Blom J., Pothier J.F., Keel C., Maurhofer M., Sievers M., 2019/09/26. Microbiology resource announcements, 8 (39). Peer-reviewed.
Multistable and dynamic CRISPRi-based synthetic circuits
Javier Santos-Moreno, Yolanda Schaerli, 2019/09/03. bioRxiv.
 
Mechanical stress impairs pheromone signaling via Pkc1-mediated regulation of the MAPK scaffold Ste5.
van Drogen F., Mishra R., Rudolf F., Walczak M.J., Lee S.S., Reiter W., Hegemann B., Pelet S., Dohnal I., Binolfi A. et al., 2019/09/02. The Journal of cell biology, 218 (9) pp. 3117-3133. Peer-reviewed.
Quorum sensing with pheromones.
Martin S.G., 2019/09. Nature microbiology, 4 (9) pp. 1430-1431. Peer-reviewed.
 
The ClpX chaperone controls autolytic splitting of Staphylococcus aureus daughter cells, but is bypassed by β-lactam antibiotics or inhibitors of WTA biosynthesis.
Jensen C., Bæk K.T., Gallay C., Thalsø-Madsen I., Xu L., Jousselin A., Ruiz Torrubia F., Paulander W., Pereira A.R., Veening J.W. et al., 2019/09. PLoS pathogens, 15 (9) pp. e1008044. Peer-reviewed.
 
Oral transfer of chemical cues, growth proteins and hormones in social insects
LeBoeuf A.C., Waridel P., Brent C.S., Goncalves A.N., Menin L., Ortiz D., Riba-Grognuz O., Koto A., Soares Z.G., Privman E. et al., 2019/08/19. eLife, 8.
Toxicity drives facilitation between 4 bacterial species.
Piccardi P., Vessman B., Mitri S., 2019/08/06. Proceedings of the National Academy of Sciences of the United States of America, 116 (32) pp. 15979-15984. Peer-reviewed.
 
Artificially selecting microbial communities: If we can breed dogs, why not microbiomes?
Arias-Sánchez F.I., Vessman B., Mitri S., 2019/08. PLoS biology, 17 (8) pp. e3000356. Peer-reviewed.
 
DNA-segment-capture model for loop extrusion by structural maintenance of chromosome (SMC) protein complexes.
Marko J.F., De Los Rios P., Barducci A., Gruber S., 2019/07/26. Nucleic acids research, 47 (13) pp. 6956-6972. Peer-reviewed.
 
Transient DNA Occupancy of the SMC Interarm Space in Prokaryotic Condensin.
Vazquez Nunez R., Ruiz Avila L.B., Gruber S., 2019/07/25. Molecular cell, 75 (2) pp. 209-223.e6. Peer-reviewed.
 
A Framework for the Modular and Combinatorial Assembly of Synthetic Gene Circuits.
Santos-Moreno J., Schaerli Y., 2019/07/19. ACS synthetic biology, 8 (7) pp. 1691-1697. Peer-reviewed.
Major Differences in the Diversity of Mycobiomes Associated with Wheat Processing and Domestic Environments: Significant Findings from High-Throughput Sequencing of Fungal Barcode ITS1.
Yashiro E., Savova-Bianchi D., Niculita-Hirzel H., 2019/07/02. International journal of environmental research and public health, 16 (13) p. 2335. Peer-reviewed.
Cell division control in Caulobacter crescentus.
Collier J., 2019/07. Biochimica et biophysica acta. Gene regulatory mechanisms, 1862 (7) pp. 685-690. Peer-reviewed.
 
External carbon addition for enhancing denitrification modifies bacterial community composition and affects CH<sub>4</sub> and N<sub>2</sub>O production in sub-arctic mining pond sediments.
Hellman M., Bonilla-Rosso G., Widerlund A., Juhanson J., Hallin S., 2019/07/01. Water Research, 158 pp. 22-33. Peer-reviewed.
 
High dietary fat intake induces a microbiota signature that promotes food allergy.
Hussain M., Bonilla-Rosso G., Kwong Chung CKC, Bäriswyl L., Rodriguez M.P., Kim B.S., Engel P., Noti M., 2019/07. The Journal of allergy and clinical immunology, 144 (1) pp. 157-170.e8. Peer-reviewed.
Refining the Pneumococcal Competence Regulon by RNA Sequencing.
Slager J., Aprianto R., Veening J.W., 2019/07/01. Journal of bacteriology, 201 (13). Peer-reviewed.
 
Transient Replication in Specialized Cells Favors Transfer of an Integrative and Conjugative Element.
Delavat F., Moritz R., van der Meer J.R., 2019/06/11. mBio, 10 (3). Peer-reviewed.
Molecular mechanisms of chemotropism and cell fusion in unicellular fungi.
Martin S.G., 2019/05/31. Journal of cell science, 132 (11). Peer-reviewed.
Three New Integration Vectors and Fluorescent Proteins for Use in the Opportunistic Human Pathogen Streptococcus pneumoniae.
Keller L.E., Rueff A.S., Kurushima J., Veening J.W., 2019/05/22. Genes, 10 (5) p. 394. Peer-reviewed.
Multi-phosphorylation reaction and clustering tune Pom1 gradient mid-cell levels according to cell size.
Gerganova V., Floderer C., Archetti A., Michon L., Carlini L., Reichler T., Manley S., Martin S.G., 2019/05/03. eLife, 8 pp. e45983. Peer-reviewed.
 
Genomic changes underlying host specialization in the bee gut symbiont Lactobacillus Firm5.
Ellegaard K.M., Brochet S., Bonilla-Rosso G., Emery O., Glover N., Hadadi N., Jaron K.S., van der Meer J.R., Robinson-Rechavi M., Sentchilo V. et al., 2019/05. Molecular ecology, 28 (9) pp. 2224-2237. Peer-reviewed.
 
The urgent need for microbiology literacy in society.
Timmis K., Cavicchioli R., Garcia J.L., Nogales B., Chavarría M., Stein L., McGenity T.J., Webster N., Singh B.K., Handelsman J. et al., 2019/05. Environmental microbiology, 21 (5) pp. 1513-1528. Peer-reviewed.
 
Infectiologie sur mesure - 2. Phagothérapie : de la théorie à l’évidence clinique [Customised infectiology - Phage therapy: from theory to clinical evidence]
Desgranges F., Bochud P.Y., Resch G., 2019/04/10. Revue medicale suisse, 15 (646) pp. 771-775. Peer-reviewed.
 
Assessing evolutionary risks of resistance for new antimicrobial therapies.
Brockhurst M.A., Harrison F., Veening J.W., Harrison E., Blackwell G., Iqbal Z., Maclean C., 2019/04. Nature ecology & evolution, 3 (4) pp. 515-517. Peer-reviewed.
Bacterial communities within Phengaris (Maculinea) alcon caterpillars are shifted following transition from solitary living to social parasitism of Myrmica ant colonies.
Szenteczki M.A., Pitteloud C., Casacci L.P., Kešnerová L., Whitaker MRL, Engel P., Vila R., Alvarez N., 2019/04. Ecology and evolution, 9 (8) pp. 4452-4464. Peer-reviewed.
Genotypes of Staphylococcus aureus: On-farm epidemiology and the consequences for prevention of intramammary infections.
Leuenberger A., Sartori C., Boss R., Resch G., Oechslin F., Steiner A., Moreillon P., Graber H.U., 2019/04. Journal of dairy science, 102 (4) pp. 3295-3309. Peer-reviewed.
Persistence of root-colonizing Pseudomonas protegens in herbivorous insects throughout different developmental stages and dispersal to new host plants.
Flury P., Vesga P., Dominguez-Ferreras A., Tinguely C., Ullrich C.I., Kleespies R.G., Keel C., Maurhofer M., 2019/04. The ISME journal, 13 (4) pp. 860-872. Peer-reviewed.
Yeast-to-hypha transition of Schizosaccharomyces japonicus in response to environmental stimuli.
Kinnaer C., Dudin O., Martin S.G., 2019/04/01. Molecular biology of the cell, 30 (8) pp. 975-991. Peer-reviewed.
Multilayered control of chromosome replication in Caulobacter crescentus.
Frandi A., Collier J., 2019/02/28. Biochemical Society transactions, 47 (1) pp. 187-196. Peer-reviewed.
Protecting maize from rootworm damage with the combined application of arbuscular mycorrhizal fungi, Pseudomonas bacteria and entomopathogenic nematodes.
Jaffuel G., Imperiali N., Shelby K., Campos-Herrera R., Geisert R., Maurhofer M., Loper J., Keel C., Turlings TCJ, Hibbard B.E., 2019/02/28. Scientific reports, 9 (1) p. 3127. Peer-reviewed.
Genomic diversity landscape of the honey bee gut microbiota.
Ellegaard K.M., Engel P., 2019/01/25. Nature communications, 10 (1) p. 446. Peer-reviewed.
Challenges in Clinical Metaproteomics Highlighted by the Analysis of Acute Leukemia Patients with Gut Colonization by Multidrug-Resistant Enterobacteriaceae.
Rechenberger J., Samaras P., Jarzab A., Behr J., Frejno M., Djukovic A., Sanz J., González-Barberá E.M., Salavert M., López-Hontangas J.L. et al., 2019/01/08. Proteomes, 7 (1). Peer-reviewed.
Archaeorhizomycetes Spatial Distribution in Soils Along Wide Elevational and Environmental Gradients Reveal Co-abundance Patterns With Other Fungal Saprobes and Potential Weathering Capacities.
Pinto-Figueroa E.A., Seddon E., Yashiro E., Buri A., Niculita-Hirzel H., van der Meer J.R., Guisan A., 2019. Frontiers in microbiology, 10 p. 656. Peer-reviewed.
Bridging the Holistic-Reductionist Divide in Microbial Ecology.
Tecon R., Mitri S., Ciccarese D., Or D., van der Meer J.R., Johnson D.R., 2019. mSystems, 4 (1) pp. e00265-18. Peer-reviewed.
Complete Genome Sequences of Five Acinetobacter baumannii Phages from Abidjan, Côte d'Ivoire.
Essoh C., Vernadet J.P., Vergnaud G., Coulibaly A., Kakou-N'Douba A., N'Guetta A.S., Resch G., Pourcel C., 2019/01. Microbiology resource announcements, 8 (1). Peer-reviewed.
 
Efficacy and tolerability of a cocktail of bacteriophages to treat burn wounds infected by Pseudomonas aeruginosa (PhagoBurn): a randomised, controlled, double-blind phase 1/2 trial.
Jault P., Leclerc T., Jennes S., Pirnay J.P., Que Y.A., Resch G., Rousseau A.F., Ravat F., Carsin H., Le Floch R. et al., 2019. The Lancet. Infectious Diseases, 19 (1) pp. 35-45. Peer-reviewed.
 
High-Throughput Allelic Replacement Screening in Bacillus subtilis.
Diebold-Durand M.L., Bürmann F., Gruber S., 2019. Methods in molecular biology, 2004 pp. 49-61. Peer-reviewed.
Probing chemotaxis activity in Escherichia coli using fluorescent protein fusions.
Roggo C., Carraro N., van der Meer J.R., 2019. Scientific Reports, 9 (1) p. 3845. Peer-reviewed.
 
Spatial structure affects phage efficacy in infecting dual-strain biofilms of Pseudomonas aeruginosa.
Testa S., Berger S., Piccardi P., Oechslin F., Resch G., Mitri S., 2019. Communications biology, 2 p. 405. Peer-reviewed.
T6SS contributes to gut microbiome invasion and killing of an herbivorous pest insect by plant-beneficial Pseudomonas protegens.
Vacheron J., Péchy-Tarr M., Brochet S., Heiman C.M., Stojiljkovic M., Maurhofer M., Keel C., 2019. The ISME Journal, 13 (5) pp. 1318-1329. Peer-reviewed.
Temperate Prophages Increase Bacterial Adhesin Expression and Virulence in an Experimental Model of Endocarditis Due to Staphylococcus aureus From the CC398 Lineage.
Laumay F., Corvaglia A.R., Diene S.M., Girard M., Oechslin F., van der Mee-Marquet N., Entenza J.M., François P., 2019. Frontiers in microbiology, 10 p. 742. Peer-reviewed.
 
The evolutionary game of interspecific mutualism in the multi-species model.
Shibasaki S., 2019. Journal of Theoretical Biology, 471 pp. 51-58. Peer-reviewed.
Using Synthetic Biology to Engineer Spatial Patterns
Santos-Moreno J., Schaerli Y., 2018/12/17. Advanced Biosystems, 0 (0) p. 1800280. Peer-reviewed.
Differential GAP requirement for Cdc42-GTP polarization during proliferation and sexual reproduction.
Gallo Castro D., Martin S.G., 2018/12/03. The Journal of cell biology, 217 (12) pp. 4215-4229. Peer-reviewed.
Adaptation to DNA damage checkpoint in senescent telomerase-negative cells promotes genome instability.
Coutelier H., Xu Z., Morisse M.C., Lhuillier-Akakpo M., Pelet S., Charvin G., Dubrana K., Teixeira M.T., 2018/12/01. Genes & development, 32 (23-24) pp. 1499-1513. Peer-reviewed.
Antibiotic-Induced Cell Chaining Triggers Pneumococcal Competence by Reshaping Quorum Sensing to Autocrine-Like Signaling.
Domenech A., Slager J., Veening J.W., 2018/11/27. Cell reports, 25 (9) pp. 2390-2400.e3. Peer-reviewed.
Membrane association and remodeling by intraflagellar transport protein IFT172.
Wang Q., Taschner M., Ganzinger K.A., Kelley C., Villasenor A., Heymann M., Schwille P., Lorentzen E., Mizuno N., 2018/11/08. Nature communications, 9 (1) p. 4684. Peer-reviewed.
Deep genome annotation of the opportunistic human pathogen Streptococcus pneumoniae D39.
Slager J., Aprianto R., Veening J.W., 2018/11/02. Nucleic acids research, 46 (19) pp. 9971-9989. Peer-reviewed.
High-resolution analysis of the pneumococcal transcriptome under a wide range of infection-relevant conditions.
Aprianto R., Slager J., Holsappel S., Veening J.W., 2018/11/02. Nucleic acids research, 46 (19) pp. 9990-10006. Peer-reviewed.
The CcmC-CcmE interaction during cytochrome c maturation by System I is driven by protein-protein and not protein-heme contacts.
Shevket S.H., Gonzalez D., Cartwright J.L., Kleanthous C., Ferguson S.J., Redfield C., Mavridou DAI, 2018/10/26. The Journal of biological chemistry, 293 (43) pp. 16778-16790. Peer-reviewed.
 
Solar photo-Fenton disinfection of 11 antibiotic-resistant bacteria (ARB) and elimination of representative AR genes. Evidence that antibiotic resistance does not imply resistance to oxidative treatment.
Giannakis S., Le T.M., Entenza J.M., Pulgarin C., 2018/10/15. Water research, 143 pp. 334-345. Peer-reviewed.
Control of proline utilization by the Lrp-like regulator PutR in Caulobacter crescentus.
Mouammine A., Eich K., Frandi A., Collier J., 2018/10/02. Scientific reports, 8 (1) p. 14677. Peer-reviewed.
 
Direct induction of microtubule branching by microtubule nucleation factor SSNA1.
Basnet N., Nedozralova H., Crevenna A.H., Bodakuntla S., Schlichthaerle T., Taschner M., Cardone G., Janke C., Jungmann R., Magiera M.M. et al., 2018/10. Nature cell biology, 20 (10) pp. 1172-1180. Peer-reviewed.
Eavesdropping and crosstalk between secreted quorum sensing peptide signals that regulate bacteriocin production in Streptococcus pneumoniae.
Miller E.L., Kjos M., Abrudan M.I., Roberts I.S., Veening J.W., Rozen D.E., 2018/10. The ISME journal, 12 (10) pp. 2363-2375. Peer-reviewed.
Function of BriC peptide in the pneumococcal competence and virulence portfolio.
Aggarwal S.D., Eutsey R., West-Roberts J., Domenech A., Xu W., Abdullah I.T., Mitchell A.P., Veening J.W., Yesilkaya H., Hiller N.L., 2018/10. PLoS pathogens, 14 (10) pp. e1007328. Peer-reviewed.
The impact of DNA methylation in Alphaproteobacteria.
Mouammine A., Collier J., 2018/10. Molecular microbiology, 110 (1) pp. 1-10. Peer-reviewed.
Synthetic circuits reveal how mechanisms of gene regulatory networks constrain evolution.
Schaerli Y., Jiménez A., Duarte J.M., Mihajlovic L., Renggli J., Isalan M., Sharpe J., Wagner A., 2018/09/10. Molecular systems biology, 14 (9) pp. e8102. Peer-reviewed.
 
CozEa and CozEb play overlapping and essential roles in controlling cell division in Staphylococcus aureus.
Stamsås G.A., Myrbråten I.S., Straume D., Salehian Z., Veening J.W., Håvarstein L.S., Kjos M., 2018/09. Molecular microbiology, 109 (5) pp. 615-632. Peer-reviewed.
 
Metagenome analysis of Russian and Georgian Pyophage cocktails and a placebo-controlled safety trial of single phage versus phage cocktail in healthy Staphylococcus aureus carriers.
McCallin S., Sarker S.A., Sultana S., Oechslin F., Brüssow H., 2018/09. Environmental microbiology, 20 (9) pp. 3278-3293. Peer-reviewed.
Conservation tillage and organic farming induce minor variations in Pseudomonas abundance, their antimicrobial function and soil disease resistance.
Dennert F., Imperiali N., Staub C., Schneider J., Laessle T., Zhang T., Wittwer R., van der Heijden MGA, Smits THM, Schlaeppi K. et al., 2018/08/01. FEMS microbiology ecology, 94 (8) p. 1. Peer-reviewed.
 
Gamete fusion triggers bipartite transcription factor assembly to block re-fertilization.
Vještica A., Merlini L., Nkosi P.J., Martin S.G., 2018/08. Nature, 560 (7718) pp. 397-400. Peer-reviewed.
 
Handling unpredictable ecosystems.
Niehus R., Mitri S., 2018/08. Nature ecology & evolution, 2 (8) pp. 1207-1208. Peer-reviewed.
Bacterial Microcolonies in Gel Beads for High-throughput Screening.
Schaerli Y., 2018/07/05. Bio-Protocol, 8 (13) pp. e2911. Peer-reviewed.
 
Assessment of the Dual Role of Clumping Factor A in S. Aureus Adhesion to Endothelium in Absence and Presence of Plasma.
Claes J., Ditkowski B., Liesenborghs L., Veloso T.R., Entenza J.M., Moreillon P., Vanassche T., Verhamme P., Hoylaerts M.F., Heying R., 2018/07. Thrombosis and haemostasis, 118 (7) pp. 1230-1241. Peer-reviewed.
 
Chlamydia trachomatis paralyses neutrophils to evade the host innate immune response.
Rajeeve K., Das S., Prusty B.K., Rudel T., 2018/07. Nature microbiology, 3 (7) pp. 824-835. Peer-reviewed.
Exploration and stabilization of Ras1 mating zone: A mechanism with positive and negative feedbacks.
Khalili B., Merlini L., Vincenzetti V., Martin S.G., Vavylonis D., 2018/07. PLoS computational biology, 14 (7) pp. e1006317. Peer-reviewed.
Author Correction: Herbivorous turtle ants obtain essential nutrients from a conserved nitrogen-recycling gut microbiome.
Hu Y., Sanders J.G., Łukasik P., D'Amelio C.L., Millar J.S., Vann D.R., Lan Y., Newton J.A., Schotanus M., Kronauer DJC et al., 2018/06/19. Nature communications, 9 (1) p. 2440. Peer-reviewed.
 
Cooperation, competition and antibiotic resistance in bacterial colonies.
Frost I., Smith WPJ, Mitri S., Millan A.S., Davit Y., Osborne J.M., Pitt-Francis J.M., MacLean R.C., Foster K.R., 2018/06. The ISME journal, 12 (6) pp. 1582-1593. Peer-reviewed.
Functional roles and metabolic niches in the honey bee gut microbiota.
Bonilla-Rosso G., Engel P., 2018/06. Current opinion in microbiology, 43 pp. 69-76. Peer-reviewed.
Root-colonizing bacteria enhance the levels of (E)-β-caryophyllene produced by maize roots in response to rootworm feeding.
Chiriboga M X., Guo H., Campos-Herrera R., Röder G., Imperiali N., Keel C., Maurhofer M., Turlings TCJ, 2018/06. Oecologia, 187 (2) pp. 459-468. Peer-reviewed.
Dynamic visits of cortical structures probe for cell size.
Gerganova V., Martin S.G., 2018/05/07. The Journal of cell biology, 217 (5) pp. 1559-1561. Peer-reviewed.
Combining a Toggle Switch and a Repressilator within the AC-DC Circuit Generates Distinct Dynamical Behaviors.
Perez-Carrasco R., Barnes C.P., Schaerli Y., Isalan M., Briscoe J., Page K.M., 2018/04/25. Cell systems, 6 (4) pp. 521-530.e3. Peer-reviewed.
Timing of gene expression in a cell-fate decision system.
Aymoz D., Solé C., Pierre J.J., Schmitt M., de Nadal E., Posas F., Pelet S., 2018/04/25. Molecular systems biology, 14 (4) pp. e8024. Peer-reviewed.
Silk Route to the Acceptance and Re-Implementation of Bacteriophage Therapy-Part II.
Expert round table on acceptance and re-implementation of bacteriophage therapy, Sybesma W., Rohde C., Bardy P., Pirnay J.P., Cooper I., Caplin J., Chanishvili N., Coffey A., De Vos D. et al., 2018/04/23. Antibiotics, 7 (2) pp. NA. Peer-reviewed.
Meta-scale mountain grassland observatories uncover commonalities as well as specific interactions among plant and non-rhizosphere soil bacterial communities.
Yashiro E., Pinto-Figueroa E., Buri A., Spangenberg J.E., Adatte T., Niculita-Hirzel H., Guisan A., van der Meer J.R., 2018/04/10. Scientific reports, 8 (1) p. 5758. Peer-reviewed.
 
Autologous Cell Therapy Approach for Duchenne Muscular Dystrophy using PiggyBac Transposons and Mesoangioblasts.
Iyer P.S., Mavoungou L.O., Ronzoni F., Zemla J., Schmid-Siegert E., Antonini S., Neff L.A., Dorchies O.M., Jaconi M., Lekka M. et al., 2018/04/04. Molecular therapy, 26 (4) pp. 1093-1108. Peer-reviewed.
Physiological and transcriptome changes induced by Pseudomonas putida acquisition of an integrative and conjugative element.
Miyazaki R., Yano H., Sentchilo V., van der Meer J.R., 2018/04/03. Scientific reports, 8 (1) p. 5550. Peer-reviewed.
Inhibition of Ras activity coordinates cell fusion with cell-cell contact during yeast mating.
Merlini L., Khalili B., Dudin O., Michon L., Vincenzetti V., Martin S.G., 2018/04/02. The Journal of cell biology, 217 (4) pp. 1467-1483. Peer-reviewed.
 
Editorial overview: Bacterial cell regulation: from genes to complex environments.
Veening J.W., Tamayo R., 2018/04. Current opinion in microbiology, 42 pp. 110-114. Peer-reviewed.
 
SMC complexes sweeping through the chromosome: going with the flow and against the tide.
Gruber S., 2018/04. Current opinion in microbiology, 42 pp. 96-103. Peer-reviewed.
Herbivorous turtle ants obtain essential nutrients from a conserved nitrogen-recycling gut microbiome.
Hu Y., Sanders J.G., Łukasik P., D'Amelio C.L., Millar J.S., Vann D.R., Lan Y., Newton J.A., Schotanus M., Kronauer DJC et al., 2018/03/06. Nature communications, 9 (1) p. 964. Peer-reviewed.
Interplay between the catabolite repression control protein Crc, Hfq and RNA in Hfq-dependent translational regulation in Pseudomonas aeruginosa.
Sonnleitner E., Wulf A., Campagne S., Pei X.Y., Wolfinger M.T., Forlani G., Prindl K., Abdou L., Resch A., Allain F.H. et al., 2018/02/16. Nucleic acids research, 46 (3) pp. 1470-1485. Peer-reviewed.
 
Ceftazidime/avibactam alone or in combination with aztreonam against colistin-resistant and carbapenemase-producing Klebsiella pneumoniae.
Jayol A., Nordmann P., Poirel L., Dubois V., 2018/02/01. The Journal of antimicrobial chemotherapy, 73 (2) pp. 542-544. Peer-reviewed.
 
CHROMagar mSuperCARBA and RAPIDEC® Carba NP test for detection of carbapenemase-producing Enterobacteriaceae.
Garcia-Quintanilla M., Poirel L., Nordmann P., 2018/02. Diagnostic microbiology and infectious disease, 90 (2) pp. 77-80. Peer-reviewed.
 
Lifestyle transitions and adaptive pathogenesis of Pseudomonas aeruginosa.
Valentini M., Gonzalez D., Mavridou D.A., Filloux A., 2018/02. Current opinion in microbiology, 41 pp. 15-20. Peer-reviewed.
 
Origin and Evolution of the Bartonella Gene Transfer Agent.
Tamarit D., Neuvonen M.M., Engel P., Guy L., Andersson SGE, 2018/02/01. Molecular biology and evolution, 35 (2) pp. 451-464. Peer-reviewed.
Mucosal Infections and Invasive Potential of Nonencapsulated <i>Streptococcus pneumoniae</i> Are Enhanced by Oligopeptide Binding Proteins AliC and AliD.
Bradshaw J.L., Pipkins H.R., Keller L.E., Pendarvis J.K., McDaniel L.S., 2018/01/16. mBio, 9 (1) pp. e02097-17. Peer-reviewed.
The complete and fully assembled genome sequence of Aeromonas salmonicida subsp. pectinolytica and its comparative analysis with other Aeromonas species: investigation of the mobilome in environmental and pathogenic strains.
Pfeiffer F., Zamora-Lagos M.A., Blettinger M., Yeroslaviz A., Dahl A., Gruber S., Habermann B.H., 2018/01/05. BMC genomics, 19 (1) p. 20. Peer-reviewed.
 
Bacterial bioreporter detection of arsenic associated with iron oxides.
van Genuchten C.M., Finger A., van der Meer J.R., Peña J., 2018. Environmental Science. Processes & Impacts, 20 (6) pp. 913-922. Peer-reviewed.
Computational prediction of inter-species relationships through omics data analysis and machine learning.
Leite DMC, Brochet X., Resch G., Que Y.A., Neves A., Peña-Reyes C., 2018. BMC Bioinformatics, 19 (Suppl 14) p. 420. Peer-reviewed.
Costs and benefits of provocation in bacterial warfare.
Gonzalez D., Sabnis A., Foster K.R., Mavridou DAI, 2018. Proceedings of the National Academy of Sciences of the United States of America, 115 (29) pp. 7593-7598. Peer-reviewed.
Expert Opinion on Three Phage Therapy Related Topics: Bacterial Phage Resistance, Phage Training and Prophages in Bacterial Production Strains.
Rohde C., Resch G., Pirnay J.P., Blasdel B.G., Debarbieux L., Gelman D., Górski A., Hazan R., Huys I., Kakabadze E. et al., 2018. Viruses, 10 (4) pp. 1-15. Peer-reviewed.
Genome Sequence of the Pseudomonas protegens Phage ΦGP100.
Vacheron J., Kupferschmied P., Resch G., Keel C., 2018. Genome Announcements, 6 (25) pp. e00261-18. Peer-reviewed.
Genomic Islands Confer Heavy Metal Resistance in <i>Mucilaginibacter kameinonensis</i> and <i>Mucilaginibacter rubeus</i> Isolated from a Gold/Copper Mine.
Li Y.P., Carraro N., Yang N., Liu B., Xia X., Feng R., Saquib Q., Al-Wathnani H.A., van der Meer J.R., Rensing C., 2018. Genes, 9 (12) p. 573. Peer-reviewed.
Gut colonization by a novel Clostridium species is associated with the onset of epizootic rabbit enteropathy.
Djukovic A., Garcia-Garcera M., Martínez-Paredes E., Isaac S., Artacho A., Martínez J., Ubeda C., 2018. Veterinary Research, 49 (1) p. 123. Peer-reviewed.
Gut microbiota composition is associated with environmental landscape in honey bees.
Jones J.C., Fruciano C., Hildebrand F., Al Toufalilia H., Balfour N.J., Bork P., Engel P., Ratnieks F.L., Hughes W.O., 2018. Ecology and Evolution, 8 (1) pp. 441-451. Peer-reviewed.
 
Heterologous Expression of Pseudomonas putida Methyl-Accepting Chemotaxis Proteins Yields Escherichia coli Cells Chemotactic to Aromatic Compounds.
Roggo C., Clerc E.E., Hadadi N., Carraro N., Stocker R., van der Meer J.R., 2018. Applied and Environmental Microbiology, 84 (18) pp. UNSP e01362-18. Peer-reviewed.
Host diet mediates a negative relationship between abundance and diversity of <i>Drosophila</i> gut microbiota.
Erkosar B., Yashiro E., Zajitschek F., Friberg U., Maklakov A.A., van der Meer J.R., Kawecki T.J., 2018. Ecology and Evolution, 8 (18) pp. 9491-9502. Peer-reviewed.
In vitro characterization of PlyE146, a novel phage lysin that targets Gram-negative bacteria.
Larpin Y., Oechslin F., Moreillon P., Resch G., Entenza J.M., Mancini S., 2018. PloS one, 13 (2) pp. e0192507. Peer-reviewed.
 
Increased Virulence of an Encapsulated Streptococcus pneumoniae Upon Expression of Pneumococcal Surface Protein K.
Pipkins H.R., Bradshaw J.L., Keller L.E., McDaniel L.S., 2018. The Journal of Infectious Diseases, 217 (10) pp. 1637-1644. Peer-reviewed.
 
Marginal role of von Willebrand factor-binding protein and coagulase in the initiation of endocarditis in rats with catheter-induced aortic vegetations.
Mancini S., Oechslin F., Menzi C., Que Y.A., Claes J., Heying R., Veloso T.R., Vanassche T., Missiakas D., Schneewind O. et al., 2018. Virulence, 9 (1) pp. 1615-1624. Peer-reviewed.
New Reference Genome Sequences for 17 Bacterial Strains of the Honey Bee Gut Microbiota.
Ellegaard K.M., Engel P., 2018. Microbiology Resource Announcements, 7 (3). Peer-reviewed.
Optimization of sample preparation and green color imaging using the mNeonGreen fluorescent protein in bacterial cells for photoactivated localization microscopy.
Stockmar I., Feddersen H., Cramer K., Gruber S., Jung K., Bramkamp M., Shin J.Y., 2018. Scientific Reports, 8 (1) p. 10137. Peer-reviewed.
 
Prospects for harnessing biocide resistance for bioremediation and detoxification.
Atashgahi S., Sánchez-Andrea I., Heipieper H.J., van der Meer J.R., Stams AJM, Smidt H., 2018. Science, 360 (6390) pp. 743-746. Peer-reviewed.
Quantitative chemical biosensing by bacterial chemotaxis in microfluidic chips.
Roggo C., Picioreanu C., Richard X., Mazza C., van Lintel H., van der Meer J.R., 2018/01. Environmental microbiology, 20 (1) pp. 241-258. Peer-reviewed.
Resistance Development to Bacteriophages Occurring during Bacteriophage Therapy.
Oechslin F., 2018. Viruses, 10 (7) p. 351. Peer-reviewed.
 
Role of the Endocytosis of Caveolae in Intracellular Signaling and Metabolism.
Muriel O., Sánchez-Álvarez M., Strippoli R., Del Pozo M.A., 2018. Progress in molecular and subcellular biology, 57 pp. 203-234. Peer-reviewed.
The complete methylome of an entomopathogenic bacterium reveals the existence of loci with unmethylated Adenines.
Payelleville A., Legrand L., Ogier J.C., Roques C., Roulet A., Bouchez O., Mouammine A., Givaudan A., Brillard J., 2018. Scientific Reports, 8 (1) p. 12091. Peer-reviewed.
The gut microbiome is associated with behavioural task in honey bees
Jones J. C., Fruciano C., Marchant J., Hildebrand F., Forslund S., Bork P., Engel P., Hughes W. O. H., 2018. Insectes Sociaux, 65 (3) pp. 419-429. Peer-reviewed.
Disentangling metabolic functions of bacteria in the honey bee gut.
Kešnerová L., Mars RAT, Ellegaard K.M., Troilo M., Sauer U., Engel P., 2017/12. PLoS biology, 15 (12) pp. e2003467. Peer-reviewed.
Bacterial Microcolonies in Gel Beads for High-Throughput Screening of Libraries in Synthetic Biology.
Duarte J.M., Barbier I., Schaerli Y., 2017/11/17. ACS synthetic biology, 6 (11) pp. 1988-1995. Peer-reviewed.
Adaptation to Chronic Nutritional Stress Leads to Reduced Dependence on Microbiota in <i>Drosophila melanogaster</i>.
Erkosar B., Kolly S., van der Meer J.R., Kawecki T.J., 2017/10/24. mBio, 8 (5) pp. e01496-17. Peer-reviewed.
 
Quorum sensing integrates environmental cues, cell density and cell history to control bacterial competence.
Moreno-Gámez S., Sorg R.A., Domenech A., Kjos M., Weissing F.J., van Doorn G.S., Veening J.W., 2017/10/11. Nature communications, 8 (1) p. 854. Peer-reviewed.
 
Live Cell Imaging of the Schizosaccharomyces pombe Sexual Life Cycle.
Merlini L., Vjestica A., Dudin O., Bendezú F., Martin S.G., 2017/10/03. Cold Spring Harbor protocols, 2017 (10) pp. pdb.prot090225. Peer-reviewed.
A bacterial toxin-antitoxin module is the origin of inter-bacterial and inter-kingdom effectors of Bartonella.
Harms A., Liesch M., Körner J., Québatte M., Engel P., Dehio C., 2017/10. PLoS genetics, 13 (10) pp. e1007077. Peer-reviewed.
 
Hafnia, an enterobacterial genus naturally resistant to colistin revealed by three susceptibility testing methods.
Jayol A., Saly M., Nordmann P., Ménard A., Poirel L., Dubois V., 2017/09/01. The Journal of antimicrobial chemotherapy, 72 (9) pp. 2507-2511. Peer-reviewed.
 
In Vitro Polymerization of F-actin on Early Endosomes.
Muriel O., Scott C.C., Larios J., Mercier V., Gruenberg J., 2017/08/28. Journal of visualized experiments 126 p. 126. Peer-reviewed.
Complete alanine scanning of the Escherichia coli RbsB ribose binding protein reveals residues important for chemoreceptor signaling and periplasmic abundance.
Reimer A., Maffenbeier V., Dubey M., Sentchilo V., Tavares D., Gil M.H., Beggah S., van der Meer J.R., 2017/08/15. Scientific reports, 7 (1) p. 8245. Peer-reviewed.
Chromosome segregation drives division site selection in Streptococcus pneumoniae.
van Raaphorst R., Kjos M., Veening J.W., 2017/07/18. Proceedings of the National Academy of Sciences of the United States of America, 114 (29) pp. E5959-E5968. Peer-reviewed.
 
Transcriptional Repressor PtvR Regulates Phenotypic Tolerance to Vancomycin in Streptococcus pneumoniae.
Liu X., Li J.W., Feng Z., Luo Y., Veening J.W., Zhang J.R., 2017/07/15. Journal of bacteriology, 199 (14) pp. UNSP e00054-17. Peer-reviewed.
 
Editorial overview: Environmental biotechnology.
van der Meer J.R., Gu M.B., 2017/06. Current opinion in biotechnology, 45 pp. ix-xi. Peer-reviewed.
 
Miniaturized and integrated whole cell living bacterial sensors in field applicable autonomous devices.
Roggo C., van der Meer J.R., 2017/06. Current opinion in biotechnology, 45 pp. 24-33. Peer-reviewed.
 
Relocation sensors to quantify signaling dynamics in live single cells.
Wosika V., Pelet S., 2017/06. Current opinion in biotechnology, 45 pp. 51-58. Peer-reviewed.
 
Shaping chromosomes by DNA capture and release: gating the SMC rings.
Gruber S., 2017/06. Current opinion in cell biology, 46 pp. 87-93. Peer-reviewed.
 
The evolution of siderophore production as a competitive trait.
Niehus R., Picot A., Oliveira N.M., Mitri S., Foster K.R., 2017/06. Evolution; international journal of organic evolution, 71 (6) pp. 1443-1455. Peer-reviewed.
 
Mechanistic Modeling of Genetic Circuits for ArsR Arsenic Regulation.
Berset Y., Merulla D., Joublin A., Hatzimanikatis V., van der Meer J.R., 2017/05/19. ACS synthetic biology, 6 (5) pp. 862-874. Peer-reviewed.
High-throughput CRISPRi phenotyping identifies new essential genes in Streptococcus pneumoniae.
Liu X., Gallay C., Kjos M., Domenech A., Slager J., van Kessel S.P., Knoops K., Sorg R.A., Zhang J.R., Veening J.W., 2017/05/10. Molecular systems biology, 13 (5) p. 931. Peer-reviewed.
 
Clumping factor A, von Willebrand factor-binding protein and von Willebrand factor anchor Staphylococcus aureus to the vessel wall.
Claes J., Liesenborghs L., Peetermans M., Veloso T.R., Missiakas D., Schneewind O., Mancini S., Entenza J.M., Hoylaerts M.F., Heying R. et al., 2017/05. Journal of thrombosis and haemostasis, 15 (5) pp. 1009-1019. Peer-reviewed.
Genomic changes associated with the evolutionary transition of an insect gut symbiont into a blood-borne pathogen.
Segers F.H., Kešnerová L., Kosoy M., Engel P., 2017/05. The ISME journal, 11 (5) pp. 1232-1244. Peer-reviewed.
 
Immune system stimulation by the gut symbiont Frischella perrara in the honey bee (Apis mellifera).
Emery O., Schmidt K., Engel P., 2017/05. Molecular ecology, 26 (9) pp. 2576-2590. Peer-reviewed.
Nuclear relocation of Kss1 contributes to the specificity of the mating response.
Pelet S., 2017/03/06. Scientific reports, 7 p. 43636. Peer-reviewed.
Synergistic Interaction Between Phage Therapy and Antibiotics Clears Pseudomonas Aeruginosa Infection in Endocarditis and Reduces Virulence.
Oechslin F., Piccardi P., Mancini S., Gabard J., Moreillon P., Entenza J.M., Resch G., Que Y.A., 2017/03/01. The Journal of infectious diseases, 215 (5) pp. 703-712. Peer-reviewed.
Caulobacter crescentus CdnL is a non-essential RNA polymerase-binding protein whose depletion impairs normal growth and rRNA transcription.
Gallego-García A., Iniesta A.A., González D., Collier J., Padmanabhan S., Elías-Arnanz M., 2017/02/24. Scientific reports, 7 p. 43240. Peer-reviewed.
 
Physiological and Transcriptome Response of the Polycyclic Aromatic Hydrocarbon Degrading Novosphingobium sp. LH128 after Inoculation in Soil.
Fida T.T., Moreno-Forero S.K., Breugelmans P., Heipieper H.J., Röling W.F., Springael D., 2017/02/07. Environmental science & technology, 51 (3) pp. 1570-1579. Peer-reviewed.
 
Ancient Heavy Metal Contamination in Soils as a Driver of Tolerant Anthyllis vulneraria Rhizobial Communities.
Mohamad R., Maynaud G., Le Quéré A., Vidal C., Klonowska A., Yashiro E., Cleyet-Marel J.C., Brunel B., 2017/01/15. Applied and environmental microbiology, 83 (2) pp. e01735-16. Peer-reviewed.
 
A Chromosome Co-Entrapment Assay to Study Topological Protein-DNA Interactions.
Wilhelm L., Gruber S., 2017. Methods in molecular biology, 1624 pp. 117-126. Peer-reviewed.
A systematic screen for morphological abnormalities during fission yeast sexual reproduction identifies a mechanism of actin aster formation for cell fusion.
Dudin O., Merlini L., Bendezú F.O., Groux R., Vincenzetti V., Martin S.G., 2017. PLoS Genetics, 13 (4) pp. e1006721. Peer-reviewed.
Antimicrobial and Insecticidal: Cyclic Lipopeptides and Hydrogen Cyanide Produced by Plant-Beneficial Pseudomonas Strains CHA0, CMR12a, and PCL1391 Contribute to Insect Killing.
Flury P., Vesga P., Péchy-Tarr M., Aellen N., Dennert F., Hofer N., Kupferschmied K.P., Kupferschmied P., Metla Z., Ma Z. et al., 2017. Frontiers in microbiology, 8 p. 100. Peer-reviewed.
 
Automated microfluidic sorting of mammalian cells labeled with magnetic microparticles for those that efficiently express and secrete a protein of interest
Droz X., Harraghy N., Lançon E., Le Fourn V., Calabrese D., Colombet T., Liechti P., Rida A., Girod P.A., Mermod N., 2017. Biotechnology and Bioengineering, 114 (8) pp. 1791-1802. Peer-reviewed.
Combined Field Inoculations of Pseudomonas Bacteria, Arbuscular Mycorrhizal Fungi, and Entomopathogenic Nematodes and their Effects on Wheat Performance
Imperiali N., Chiriboga X., Schlaeppi K., Fesselet M., Villacrés D., Jaffuel G., Bender S.F., Dennert F., Blanco-Pérez R., van der Heijden M.G.A. et al., 2017. Frontiers in Plant Science, 8 p. 1809. Peer-reviewed.
 
Computational Prediction of Host-Pathogen Interactions Through Omics Data Analysis and Machine Learning
Carvalho Leite D.M., Brochet X., Resch G., Que Y.A., Neves A., Peña-Reyes C., 2017. Bioinformatics and Biomedical Engineering, 10209 pp. 360-371. Peer-reviewed.
Distribution of 2,4-Diacetylphloroglucinol Biosynthetic Genes among the Pseudomonas spp. Reveals Unexpected Polyphyletism.
Almario J., Bruto M., Vacheron J., Prigent-Combaret C., Moënne-Loccoz Y., Muller D., 2017. Frontiers in Microbiology, 8 p. 1218. Peer-reviewed.
Draft Genome Sequence of Microbacterium foliorum Strain 122 Isolated from a Plant Growing in a Chronically Hydrocarbon-Contaminated Site.
Lumactud R., Fulthorpe R., Sentchilo V., van der Meer J.R., 2017. Genome Announcements, 5 (21) pp. e00434-17. Peer-reviewed.
Draft Genome Sequence of Plantibacterflavus Strain 251 Isolated from a Plant Growing in a Chronically Hydrocarbon-Contaminated Site.
Lumactud R., Fulthorpe R., Sentchilo V., van der Meer J.R., 2017. Genome announcements, 5 (17) p. 0. Peer-reviewed.
 
Dynamics of signal transduction in single cells quantified by microscopy
Ma M., Mira N., Pelet S., 2017. pp. 289-318 dans Nielsen J., Hohmann S. (eds.) Systems Biology chap. 11, Wiley-VCH.
Evolutionary Dynamics of Pathoadaptation Revealed by Three Independent Acquisitions of the VirB/D4 Type IV Secretion System in Bartonella.
Harms A., Segers F.H., Quebatte M., Mistl C., Manfredi P., Körner J., Chomel B.B., Kosoy M., Maruyama S., Engel P. et al., 2017. Genome Biology and Evolution, 9 (3) pp. 761-776. Peer-reviewed.
 
Fungicidal activity of copper-sputtered flexible surfaces under dark and actinic light against azole-resistant Candida albicans and Candida glabrata.
Ballo MKS, Rtimi S., Kiwi J., Pulgarin C., Entenza J.M., Bizzini A., 2017. Journal of Photochemistry and Photobiology. B, Biology, 174 pp. 229-234. Peer-reviewed.
 
Interbacterial predation as a strategy for DNA acquisition in naturally competent bacteria.
Veening J.W., Blokesch M., 2017. Nature Reviews. Microbiology, 15 (10) pp. 621-629. Peer-reviewed.
MAR-Mediated transgene integration into permissive chromatin and increased expression by recombination pathway engineering.
Kostyrko K., Neuenschwander S., Junier T., Regamey A., Iseli C., Schmid-Siegert E., Bosshard S., Majocchi S., Le Fourn V., Girod P.A. et al., 2017. Biotechnology and Bioengineering, 114 (2) pp. 384-396. Peer-reviewed.
Mobilizable genomic islands, different strategies for the dissemination of multidrug resistance and other adaptive traits.
Carraro N., Rivard N., Burrus V., Ceccarelli D., 2017. Mobile Genetic Elements, 7 (2) pp. 1-6. Peer-reviewed.
 
Muropeptide signature of inhibitors of protein synthesis correlates with β-lactam synergism against methicillin-resistant Staphylococcus aureus.
Guignard B., Majcherczyk P.A., Monachon C., Vouillamoz J., Moreillon P., 2017. International Journal of Antimicrobial Agents, 49 (1) pp. 53-61. Peer-reviewed.
 
Nuclear displacement and fluorescence recovery after photobleaching (FRAP) assays to study division site placement and cytokinesis in fission yeast.
Ullal P., Bhatia P., Martin S.G., 2017. Methods in Cell Biology, 137 pp. 341-353. Peer-reviewed.
 
Pentapeptide-rich peptidoglycan at the Bacillus subtilis cell-division site.
Morales Angeles D., Liu Y., Hartman A.M., Borisova M., de Sousa Borges A., de Kok N., Beilharz K., Veening J.W., Mayer C., Hirsch A.K. et al., 2017. Molecular Microbiology, 104 (2) pp. 319-333. Peer-reviewed.
 
Phage Therapy: A New Horizon in the Antibacterial Treatment of Oral Pathogens.
Shlezinger M., Khalifa L., Houri-Haddad Y., Coppenhagen-Glazer S., Resch G., Que Y.A., Beyth S., Dorfman E., Hazan R., Beyth N., 2017. Current topics in medicinal chemistry, 17 (10) pp. 1199-1211. Peer-reviewed.
Phosphorylation of filamin A regulates chemokine receptor CCR2 recycling.
Pons M., Izquierdo I., Andreu-Carbó M., Garrido G., Planagumà J., Muriel O., Del Pozo M.A., Geli M.I., Aragay A.M., 2017. Journal of Cell Science, 130 (2) pp. 490-501. Peer-reviewed.
Purification and characterisation of the yeast plasma membrane ATP binding cassette transporter Pdr11p.
Laub K.R., Marek M., Stanchev L.D., Herrera S.A., Kanashova T., Bourmaud A., Dittmar G., Günther Pomorski T., 2017. PLoS One, 12 (9) pp. e0184236. Peer-reviewed.
 
Recent human history governs global ant invasion dynamics. Nature Ecology & Evolution.
Bertelsmeier C., Ollier S., Liebhold A., Keller L., 2017. Nature Ecology & Evolution, 1 pp. 1-5. Peer-reviewed.
Relationships between Root Pathogen Resistance, Abundance and Expression of Pseudomonas Antimicrobial Genes, and Soil Properties in Representative Swiss Agricultural Soils
Imperiali N., Dennert F., Schneider J., Laessle T., Velatta C., Fesselet M., Wyler M., Mascher F., Mavrodi O., Mavrodi D. et al., 2017. Frontiers in Plant Science, 8 p. 427. Peer-reviewed.
Retraction Notice of the Article: The DYRK-family kinase Pom1 phosphorylates the F-BAR protein Cdc15 to prevent division at cell poles
Ullal P., McDonald N.A., Chen J.S., Lo Presti L., Roberts-Galbraith R.H., Gould K.L., Martin S.G., 2017. The Journal of cell biology, 211 (3) pp. 653-668. Peer-reviewed.
Salmonella genomic island 1 (SGI1) reshapes the mating apparatus of IncC conjugative plasmids to promote self-propagation.
Carraro N., Durand R., Rivard N., Anquetil C., Barrette C., Humbert M., Burrus V., 2017. PLoS Genetics, 13 (3) pp. e1006705. Peer-reviewed.
Structure of Full-Length SMC and Rearrangements Required for Chromosome Organization.
Diebold-Durand M.L., Lee H., Ruiz Avila L.B., Noh H., Shin H.C., Im H., Bock F.P., Bürmann F., Durand A., Basfeld A. et al., 2017. Molecular Cell, 67 (2) pp. 334-347.e5. Peer-reviewed.
The hidden life of integrative and conjugative elements.
Delavat F., Miyazaki R., Carraro N., Pradervand N., van der Meer J.R., 2017. FEMS Microbiology Reviews, 41 (4) pp. 512-537. Peer-reviewed.
 
The trans-envelope architecture and function of the type 2 secretion system: new insights raising new questions.
Thomassin J.L., Santos Moreno J., Guilvout I., Tran Van Nhieu G., Francetic O., 2017. Molecular Microbiology, 105 (2) pp. 211-226. Peer-reviewed.
Tuned SMC Arms Drive Chromosomal Loading of Prokaryotic Condensin.
Bürmann F., Basfeld A., Vazquez Nunez R., Diebold-Durand M.L., Wilhelm L., Gruber S., 2017. Molecular Cell, 65 (5) pp. 861-872.e9. Peer-reviewed.
Antibodies Targeting Hsa and PadA Prevent Platelet Aggregation and Protect Rats against Experimental Endocarditis Induced by Streptococcus gordonii.
Mancini S., Menzi C., Oechslin F., Moreillon P., Entenza J.M., 2016/12. Infection and immunity, 84 (12) pp. 3557-3563. Peer-reviewed.
Collective Resistance in Microbial Communities by Intracellular Antibiotic Deactivation.
Sorg R.A., Lin L., van Doorn G.S., Sorg M., Olson J., Nizet V., Veening J.W., 2016/12. PLoS biology, 14 (12) pp. e2000631. Peer-reviewed.
 
Role and organization of the actin cytoskeleton during cell-cell fusion.
Martin S.G., 2016/12. Seminars in cell & developmental biology, 60 pp. 121-126. Peer-reviewed.
Specific surface glycan decorations enable antimicrobial peptide resistance in plant-beneficial pseudomonads with insect-pathogenic properties.
Kupferschmied P., Chai T., Flury P., Blom J., Smits T.H., Maurhofer M., Keel C., 2016/11. Environmental microbiology, 18 (11) pp. 4265-4281. Peer-reviewed.
A look into the toolbox of multi-talents: insect pathogenicity determinants of plant-beneficial pseudomonads.
Keel C., 2016/10. Environmental microbiology, 18 (10) pp. 3207-3209. Peer-reviewed.
Interspecific cooperation: enhanced growth, attachment and strain-specific distribution in biofilms through Azospirillum brasilense-Pseudomonas protegens co-cultivation.
Pagnussat L.A., Salcedo F., Maroniche G., Keel C., Valverde C., Creus C.M., 2016/10. FEMS microbiology letters, 363 (20) pp. fnw238. Peer-reviewed.
 
Abundance of plant beneficial pseudomonads in the rhizosphere of winter wheat grown in different agricultural management systems
Dennert F., Schneider J., Imperiali N., Mavrodi D., Mavrodi O., 2016/09/12., International Organisation for Biological Control of noxious animals and plants (IOBC) pp. 144-148 dans Köhl Jürgen, Bardin Marc (eds.) IOBC-WPRS Bulletin, IOBC-WPRS.
Towards improved biomonitoring tools for an intensified sustainable multi-use environment.
van der Meer J.R., 2016/09. Microbial biotechnology, 9 (5) pp. 658-665. Peer-reviewed.
 
Development of Potent and Selective S. aureus Sortase A Inhibitors Based on Peptide Macrocycles.
Rentero Rebollo I., McCallin S., Bertoldo D., Entenza J.M., Moreillon P., Heinis C., 2016/06/09. ACS medicinal chemistry letters, 7 (6) pp. 606-611.
The Bee Microbiome: Impact on Bee Health and Model for Evolution and Ecology of Host-Microbe Interactions.
Engel P., Kwong W.K., McFrederick Q., Anderson K.E., Barribeau S.M., Chandler J.A., Cornman R.S., Dainat J., de Miranda J.R., Doublet V. et al., 2016/04/26. mBio, 7 (2) pp. e02164-15. Peer-reviewed.
Local Pheromone Release from Dynamic Polarity Sites Underlies Cell-Cell Pairing during Yeast Mating.
Merlini L., Khalili B., Bendezú F.O., Hurwitz D., Vincenzetti V., Vavylonis D., Martin S.G., 2016/04/25. Current biology, 26 (8) pp. 1117-1125. Peer-reviewed.
An automated microreactor for semi-continuous biosensor measurements.
Buffi N., Beggah S., Truffer F., Geiser M., van Lintel H., Renaud P., van der Meer J.R., 2016/04/21. Lab on a chip, 16 (8) pp. 1383-1392. Peer-reviewed.
 
Die Bodenbiologie bringt Landwirte und Wissenschaftler zusammen
Marie Fesselet, Jacques Dugon, Thomas Degen, Francesca Dennert, Klaus Schläppi, Geoffrey Jaffuel, Xavier Chiriboga, Monika Maurhofer, Raquel Campos Herrera, Nicola Imperiali et al., 2016/03. Agrarforschung Schweiz, 7 (3) pp. 156-159.
The Evolution of Quorum Sensing as a Mechanism to Infer Kinship.
Schluter J., Schoech A.P., Foster K.R., Mitri S., 2016/03. PLoS computational biology, 12 (4) pp. e1004848. Peer-reviewed.
 
Comparison of differential gene expression to water stress among bacteria with relevant pollutant-degradation properties.
Moreno-Forero S.K., Rojas E., Beggah S., van der Meer J.R., 2016/02. Environmental microbiology reports, 8 (1) pp. 91-102.
 
Pleiotropy and the low cost of individual traits promote cooperation.
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