Centre intégratif de génomique

Equipe principale | CIG Services communs | Genomics Technologies Facility (GTF) | Group Benton | Group Desvergne | Group Fajas | Group Fankhauser | Group Franken | Group Gambetta | Group Gatfield | Group Hernandez | Group Herr | Group Michalik | Group Reymond | Group Stasiak | Group Thorens | Group Wahli | Group van Leeuwen | Mouse Metabolic Evaluation Facility (MEF) | Protein Analysis Facility (PAF)
Publications | Mémoires et thèses

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82 publications

2019 | 2018 | 2017 | 2016 | 2015 | 2014 | 2013 | 2012 | 2011 | 2010 | 2009 | 2008 | 2007 | 2005 |
 
Kleine-Levin syndrome is associated with LMOD3 variants.
Al Shareef S.M., Basit S., Li S., Pfister C., Pradervand S., Lecendreux M., Mayer G., Dauvilliers Y., Salpietro V., Houlden H. et al., 2019/06. Journal of sleep research, 28 (3) pp. e12718. Peer-reviewed.
Sensory neuron lineage mapping and manipulation in the Drosophila olfactory system.
Chai P.C., Cruchet S., Wigger L., Benton R., 2019/02/07. Nature Communications, 10 (1) p. 643. Peer-reviewed.
Intratumoral Tcf1<sup>+</sup>PD-1<sup>+</sup>CD8<sup>+</sup> T Cells with Stem-like Properties Promote Tumor Control in Response to Vaccination and Checkpoint Blockade Immunotherapy.
Siddiqui I., Schaeuble K., Chennupati V., Fuertes Marraco S.A., Calderon-Copete S., Pais Ferreira D., Carmona S.J., Scarpellino L., Gfeller D., Pradervand S. et al., 2019/01/15. Immunity, 50 (1) pp. 195-211.e10. Peer-reviewed.
In Vitro Culture of the Insect Endosymbiont Spiroplasma poulsonii Highlights Bacterial Genes Involved in Host- Symbiont Interaction
Masson F., Calderon Copete S., Schüpfer F., Garcia-Arraez G., Lemaitre B., 2018. mBio, 9 (2) pp. e00024-18. Peer-reviewed.
Size and Content of the Sex-Determining Region of the Y Chromosome in Dioecious <i>Mercurialis annua</i>, a Plant with Homomorphic Sex Chromosomes.
Veltsos P., Cossard G., Beaudoing E., Beydon G., Savova Bianchi D., Roux C., C González-Martínez S., R Pannell J., 2018. Genes, 9 (6) pp. NA. Peer-reviewed.
 
Low number of fixed somatic mutations in a long-lived oak tree.
Schmid-Siegert E., Sarkar N., Iseli C., Calderon S., Gouhier-Darimont C., Chrast J., Cattaneo P., Schütz F., Farinelli L., Pagni M. et al., 2017/12. Nature plants, 3 (12) pp. 926-929. Peer-reviewed.
 
Rare missense mutations in P2RY11 in narcolepsy with cataplexy.
Degn M., Dauvilliers Y., Dreisig K., Lopez R., Pfister C., Pradervand S., Rahbek Kornum B., Tafti M., 2017/06/01. Brain, 140 (6) pp. 1657-1668. Peer-reviewed.
Renal Fanconi Syndrome and Hypophosphatemic Rickets in the Absence of Xenotropic and Polytropic Retroviral Receptor in the Nephron.
Ansermet C., Moor M.B., Centeno G., Auberson M., Hu D.Z., Baron R., Nikolaeva S., Haenzi B., Katanaeva N., Gautschi I. et al., 2017/04. Journal of the American Society of Nephrology : JASN, 28 (4) pp. 1073-1078. Peer-reviewed.
Plasma Dihydroceramides Are Diabetes Susceptibility Biomarker Candidates in Mice and Humans.
Wigger L., Cruciani-Guglielmacci C., Nicolas A., Denom J., Fernandez N., Fumeron F., Marques-Vidal P., Ktorza A., Kramer W., Schulte A. et al., 2017/02/28. Cell reports, 18 (9) pp. 2269-2279. Peer-reviewed.
 
MC1R variants affect the expression of melanocortin and melanogenic genes and the association between melanocortin genes and coloration.
San-Jose L.M., Ducrest A.L., Ducret V., Simon C., Richter H., Wakamatsu K., Roulin A., 2017/01. Molecular ecology, 26 (1) pp. 259-276. Peer-reviewed.
Nephron-Specific Deletion of Circadian Clock Gene Bmal1 Alters the Plasma and Renal Metabolome and Impairs Drug Disposition.
Nikolaeva S., Ansermet C., Centeno G., Pradervand S., Bize V., Mordasini D., Henry H., Koesters R., Maillard M., Bonny O. et al., 2016/10. Journal of the American Society of Nephrology : JASN, 27 (10) pp. 2997-3004. Peer-reviewed.
Bevacizumab specifically decreases elevated levels of circulating KIT+CD11b+ cells and IL-10 in metastatic breast cancer patients.
Cattin S., Fellay B., Pradervand S., Trojan A., Ruhstaller T., Rüegg C., Fürstenberger G., 2016/03/08. Oncotarget, 7 (10) pp. 11137-11150. Peer-reviewed.
Comparative transcriptome profiling of the injured zebrafish and mouse hearts identifies miRNA-dependent repair pathways.
Crippa S., Nemir M., Ounzain S., Ibberson M., Berthonneche C., Sarre A., Boisset G., Maison D., Harshman K., Xenarios I. et al., 2016. Cardiovascular Research, 110 (1) pp. 73-84. Peer-reviewed.
Complete Genome Sequence of Mycoplasma mycoides subsp. mycoides T1/44, a Vaccine Strain against Contagious Bovine Pleuropneumonia.
Gourgues G., Barré A., Beaudoing E., Weber J., Magdelenat G., Barbe V., Schieck E., Jores J., Vashee S., Blanchard A. et al., 2016. Genome Announcements, 4 (2) pp. e00263-16. Peer-reviewed.
 
Galactofuranose in Mycoplasma mycoides is important for membrane integrity and conceals adhesins but does not contribute to serum resistance.
Schieck E., Lartigue C., Frey J., Vozza N., Hegermann J., Miller R.A., Valguarnera E., Muriuki C., Meens J., Nene V. et al., 2016. Molecular Microbiology, 99 (1) pp. 55-70.
Identification and molecular characterisation of Lausanne Institutional Biobank participants with familial hypercholesterolaemia - a proof-of-concept study.
Maurer F., Pradervand S., Guilleret I., Nanchen D., Maghraoui A., Chapatte L., Bojkowska K., Bhuiyan Z.A., Jacquemont N., Harshman K. et al., 2016. Swiss medical weekly, 146 pp. w14326. Peer-reviewed.
 
NANS-mediated synthesis of sialic acid is required for brain and skeletal development.
van Karnebeek C.D., Bonafé L., Wen X.Y., Tarailo-Graovac M., Balzano S., Royer-Bertrand B., Ashikov A., Garavelli L., Mammi I., Turolla L. et al., 2016. Nature Genetics, 48 (7) pp. 777-784. Peer-reviewed.
RNA Sequencing-Based Genome Reannotation of the Dermatophyte Arthroderma benhamiae and Characterization of Its Secretome and Whole Gene Expression Profile during Infection.
Tran V.D., De Coi N., Feuermann M., Schmid-Siegert E., Băguţ E.T., Mignon B., Waridel P., Peter C., Pradervand S., Pagni M. et al., 2016. mSystems, 1 (4) pp. e00036. Peer-reviewed.
 
T Cell Factor 1-Expressing Memory-like CD8(+) T Cells Sustain the Immune Response to Chronic Viral Infections.
Utzschneider D.T., Charmoy M., Chennupati V., Pousse L., Ferreira D.P., Calderon-Copete S., Danilo M., Alfei F., Hofmann M., Wieland D. et al., 2016. Immunity, 45 (2) pp. 415-427. Peer-reviewed.
 
The EXS Domain of PHO1 Participates in the Response of Shoots to Phosphate Deficiency via a Root-to-Shoot Signal.
Wege S., Khan G.A., Jung J.Y., Vogiatzaki E., Pradervand S., Aller I., Meyer A.J., Poirier Y., 2016. Plant Physiology, 170 (1) pp. 385-400.
The Genome of the Toluene-Degrading Pseudomonas veronii Strain 1YdBTEX2 and Its Differential Gene Expression in Contaminated Sand.
Morales M., Sentchilo V., Bertelli C., Komljenovic A., Kryuchkova-Mostacci N., Bourdilloud A., Linke B., Goesmann A., Harshman K., Segers F. et al., 2016. PloS one, 11 (11) pp. e0165850. Peer-reviewed.
Cardiac-Specific SOCS3 Deletion Prevents In Vivo Myocardial Ischemia Reperfusion Injury through Sustained Activation of Cardioprotective Signaling Molecules.
Nagata T., Yasukawa H., Kyogoku S., Oba T., Takahashi J., Nohara S., Minami T., Mawatari K., Sugi Y., Shimozono K. et al., 2015. PLoS One, 10 (5) pp. e0127942.
Comparative genome analysis of Pseudomonas knackmussii B13, the first bacterium known to degrade chloroaromatic compounds.
Miyazaki R., Bertelli C., Benaglio P., Canton J., De Coi N., Gharib W.H., Gjoksi B., Goesmann A., Greub G., Harshman K. et al., 2015. Environmental Microbiology, 17 (1) pp. 91-104.
High quality draft genomes of the Mycoplasma mycoides subsp. mycoides challenge strains Afadé and B237.
Fischer A., Santana-Cruz I., Hegerman J., Gourlé H., Schieck E., Lambert M., Nadendla S., Wesonga H., Miller R.A., Vashee S. et al., 2015. Standards in Genomic Sciences, 10 p. 89.
RNA Enrichment Method for Quantitative Transcriptional Analysis of Pathogens In Vivo Applied to the Fungus Candida albicans.
Amorim-Vaz S., Tran Vdu T, Pradervand S., Pagni M., Coste A.T., Sanglard D., 2015. Mbio, 6 (5) pp. e00942-e00915. Peer-reviewed.
Sequencing and characterizing the genome of Estrella lausannensis as an undergraduate project: training students and biological insights.
Bertelli C., Aeby S., Chassot B., Clulow J., Hilfiker O., Rappo S., Ritzmann S., Schumacher P., Terrettaz C., Benaglio P. et al., 2015. Frontiers in Microbiology, 6 (101) p. 101. Peer-reviewed.
 
Wounding of Arabidopsis halleri leaves enhances cadmium accumulation that acts as a defense against herbivory.
Plaza S., Weber J., Pajonk S., Thomas J., Talke I.N., Schellenberg M., Pradervand S., Burla B., Geisler M., Martinoia E. et al., 2015. Biometals, 28 (3) pp. 521-528.
Deletion of Sirt3 does not affect atherosclerosis but accelerates weight gain and impairs rapid metabolic adaptation in LDL receptor knockout mice: implications for cardiovascular risk factor development.
Winnik S., Gaul D.S., Preitner F., Lohmann C., Weber J., Miranda M.X., Liu Y., van Tits L.J., Mateos J.M., Brokopp C.E. et al., 2014. Basic Research in Cardiology, 109 (1) p. 399.
 
DQB1 locus alone explains most of the risk and protection in narcolepsy with cataplexy in Europe.
Tafti M., Hor H., Dauvilliers Y., Lammers G.J., Overeem S., Mayer G., Javidi S., Iranzo A., Santamaria J., Peraita-Adrados R. et al., 2014. Sleep, 37 (1) pp. 19-25.
 
Genome-wide re-sequencing of multidrug-resistant Mycobacterium leprae Airaku-3.
Singh P., Benjak A., Carat S., Kai M., Busso P., Avanzi C., Paniz-Mondolfi A., Peter C., Harshman K., Rougemont J. et al., 2014. Clinical Microbiology and Infection, 20 (10) pp. O619-O622.
Global phylogenomic analysis of nonencapsulated Streptococcus pneumoniae reveals a deep-branching classic lineage that is distinct from multiple sporadic lineages.
Hilty M., Wüthrich D., Salter S.J., Engel H., Campbell S., Sá-Leão R., de Lencastre H., Hermans P., Sadowy E., Turner P. et al., 2014. Genome Biology and Evolution, 6 (12) pp. 3281-3294.
Local Renal Circadian Clocks Control Fluid-Electrolyte Homeostasis and BP.
Tokonami N., Mordasini D., Pradervand S., Centeno G., Jouffe C., Maillard M., Bonny O., Gachon F., Gomez R.A., Sequeira-Lopez M.L. et al., 2014. Journal of the American Society of Nephrology, 25 (7) pp. 1430-1439.
Circulating microRNAs as biomarkers for detection of autologous blood transfusion.
Leuenberger N., Schumacher Y.O., Pradervand S., Sander T., Saugy M., Pottgiesser T., 2013. Plos One, 8 (6) pp. e66309. Peer-reviewed.
Comprehensive Expression Analyses of Neural Cell-Type-Specific miRNAs Identify New Determinants of the Specification and Maintenance of Neuronal Phenotypes.
Jovicic A., Roshan R., Moisoi N., Pradervand S., Moser R., Pillai B., Luthi-Carter R., 2013. Journal of Neuroscience, 33 (12) pp. 5127-5137.
 
FAM111A Mutations Result in Hypoparathyroidism and Impaired Skeletal Development.
Unger S., Górna M.W., Le Béchec A., Do Vale-Pereira S., Bedeschi M.F., Geiberger S., Grigelioniene G., Horemuzova E., Lalatta F., Lausch E. et al., 2013. American Journal of Human Genetics, 92 (6) pp. 990-995.
 
Genome-wide transposon insertion scanning of environmental survival functions in the polycyclic aromatic hydrocarbon degrading bacterium Sphingomonas wittichii RW1.
Roggo C., Coronado E., Moreno-Forero S.K., Harshman K., Weber J., van der Meer J.R., 2013. Environmental Microbiology, 15 (10) pp. 2681-2695.
Global transcriptome sequencing identifies chlamydospore specific markers in Candida albicans and Candida dubliniensis.
Palige K., Linde J., Martin R., Böttcher B., Citiulo F., Sullivan D.J., Weber J., Staib C., Rupp S., Hube B. et al., 2013. PLoS One, 8 (4) pp. e61940.
 
Identification of Multiple Mechanisms of Resistance to Vemurafenib in a Patient with BRAFV600E-Mutated Cutaneous Melanoma Successfully Rechallenged after Progression.
Romano E., Pradervand S., Paillusson A., Weber J., Harshman K., Muehlethaler K., Speiser D., Peters S., Rimoldi D., Michielin O., 2013. Clinical Cancer Research, 19 (20) pp. 5749-5757.
 
Malaria haplotype frequency estimation.
Wigger L., Vogt J.E., Roth V., 2013. Statistics in Medicine, 32 (21) pp. 3737-3751.
 
Pleiotropy in the melanocortin system: expression levels of this system are associated with melanogenesis and pigmentation in the tawny owl (Strix aluco).
Emaresi G., Ducrest A.L., Bize P., Richter H., Simon C., Roulin A., 2013. Molecular Ecology, 22 (19) pp. 4915-4930.
Context-dependent dual role of SKI8 homologs in mRNA synthesis and turnover.
Dorcey E., Rodriguez-Villalon A., Salinas P., Santuari L., Pradervand S., Harshman K., Hardtke C.S., 2012. PLoS Genetics, 8 (4) pp. e1002652.
 
Exome sequencing identifies recurrent somatic MAP2K1 and MAP2K2 mutations in melanoma.
Nikolaev S.I., Rimoldi D., Iseli C., Valsesia A., Robyr D., Gehrig C., Harshman K., Guipponi M., Bukach O., Zoete V. et al., 2012. Nature Genetics, 44 (2) pp. 133-139.
Genome-wide RNA polymerase II profiles and RNA accumulation reveal kinetics of transcription and associated epigenetic changes during diurnal cycles.
Le Martelot G., Canella D., Symul L., Migliavacca E., Gilardi F., Liechti R., Martin O., Harshman K., Delorenzi M., Desvergne B. et al., 2012. PLoS Biology, 10 (11) pp. e1001442.
 
Identification and functional characterization of Rca1, a transcription factor involved in both antifungal susceptibility and host response in Candida albicans.
Vandeputte P., Pradervand S., Ischer F., Coste A.T., Ferrari S., Harshman K., Sanglard D., 2012. Eukaryotic Cell, 11 (7) pp. 916-931.
Identification of infectious agents in onychomycoses by PCR-terminal restriction fragment length polymorphism.
Verrier J., Pronina M., Peter C., Bontems O., Fratti M., Salamin K., Schürch S., Gindro K., Wolfender J.L., Harshman K. et al., 2012. Journal of Clinical Microbiology, 50 (3) pp. 553-561. Peer-reviewed.
 
Impact of salt on cardiac differential gene expression and coronary lesion in normotensive mineralocorticoid-treated mice.
Wang Q., Domenighetti A.A., Schäfer S.C., Weber J., Simon A., Maillard M.P., Pedrazzini T., Chen J., Lehr H.A., Burnier M., 2012. American Journal of Physiology. Regulatory, Integrative and Comparative Physiology, 302 (9) pp. R1025-R1033.
Insect oral secretions suppress wound-induced responses in Arabidopsis.
Consales F., Schweizer F., Erb M., Gouhier-Darimont C., Bodenhausen N., Bruessow F., Sobhy I., Reymond P., 2012. Journal of Experimental Botany, 63 (2) pp. 727-737. Peer-reviewed.
Key electrophysiological, molecular, and metabolic signatures of sleep and wakefulness revealed in primary cortical cultures.
Hinard V., Mikhail C., Pradervand S., Curie T., Houtkooper R.H., Auwerx J., Franken P., Tafti M., 2012. Journal of Neuroscience, 32 (36) pp. 12506-12517.
Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling.
Hornitschek P., Kohnen M.V., Lorrain S., Rougemont J., Ljung K., López-Vidriero I., Franco-Zorrilla J.M., Solano R., Trevisan M., Pradervand S. et al., 2012. Plant Journal, 71 (5) pp. 699-711.
 
PPARβ/δ affects pancreatic β cell mass and insulin secretion in mice.
Iglesias J., Barg S., Vallois D., Lahiri S., Roger C., Yessoufou A., Pradevand S., McDonald A., Bonal C., Reimann F. et al., 2012. Journal of Clinical Investigation, 122 (11) pp. 4105-4117.
The circadian clock modulates renal sodium handling.
Nikolaeva S., Pradervand S., Centeno G., Zavadova V., Tokonami N., Maillard M., Bonny O., Firsov D., 2012. Journal of the American Society of Nephrology, 23 (6) pp. 1019-1026. Peer-reviewed.
BlastR--fast and accurate database searches for non-coding RNAs.
Bussotti G., Raineri E., Erb I., Zytnicki M., Wilm A., Beaudoing E., Bucher P., Notredame C., 2011. Nucleic Acids Research, 39 (16) pp. 6886-6895.
 
Circulating microRNAs as long-term biomarkers for the detection of erythropoiesis-stimulating agent abuse.
Leuenberger N., Jan N., Pradervand S., Robinson N., Saugy M., 2011. Drug Testing and Analysis, 3 (11-12) pp. 771-776.
 
Copy number variation modifies expression time courses.
Chaignat E., Yahya-Graison E.A., Henrichsen C.N., Chrast J., Schütz F., Pradervand S., Reymond A., 2011. Genome Research, 21 (1) pp. 106-113.
 
Priming for enhanced defence responses by specific inhibition of the Arabidopsis response to coronatine.
Tsai C.H., Singh P., Chen C.W., Thomas J., Weber J., Mauch-Mani B., Zimmerli L., 2011. Plant Journal, 65 (3) pp. 469-479.
The genome of the fire ant Solenopsis invicta.
Wurm Y., Wang J., Riba-Grognuz O., Corona M., Nygaard S., Hunt B.G., Ingram K.K., Falquet L., Nipitwattanaphon M., Gotzek D. et al., 2011. Proceedings of the National Academy of Sciences of the United States of America, 108 (14) pp. 5679-5684. Peer-reviewed.
A comprehensive analysis of gene expression profiles in distal parts of the mouse renal tubule.
Pradervand S., Zuber Mercier A., Centeno G., Bonny O., Firsov D., 2010. Pflügers Archiv, 460 (6) pp. 925-952.
 
Concordance among digital gene expression, microarrays, and qPCR when measuring differential expression of microRNAs.
Pradervand S., Weber J., Lemoine F., Consales F., Paillusson A., Dupasquier M., Thomas J., Richter H., Kaessmann H., Beaudoing E. et al., 2010. Biotechniques, 48 (3) pp. 219-222.
 
Differential gene expression in the pathogenic dermatophyte Arthroderma benhamiae in vitro versus during infection.
Staib P., Zaugg C., Mignon B., Weber J., Grumbt M., Pradervand S., Harshman K., Monod M., 2010. Microbiology, 156 (Pt 3) pp. 884-895. Peer-reviewed.
 
Elevated Tribbles homolog 2-specific antibody levels in narcolepsy patients.
Cvetkovic-Lopes V., Bayer L., Dorsaz S., Maret S., Pradervand S., Dauvilliers Y., Lecendreux M., Lammers G.J., Donjacour C.E., Du Pasquier R.A. et al., 2010. Journal of Clinical Investigation, 120 (3) pp. 713-719. Peer-reviewed.
Phenotypic consequences of copy number variation: insights from Smith-Magenis and Potocki-Lupski syndrome mouse models.
Ricard G., Molina J., Chrast J., Gu W., Gheldof N., Pradervand S., Schütz F., Young J.I., Lupski J.R., Reymond A. et al., 2010. PLoS Biology, 8 (11) pp. e1000543. Peer-reviewed.
 
Separating the contribution of glucocorticoids and wakefulness to the molecular and electrophysiological correlates of sleep homeostasis.
Mongrain V., Hernandez S.A., Pradervand S., Dorsaz S., Curie T., Hagiwara G., Gip P., Heller H.C., Franken P., 2010. Sleep, 33 (9) pp. 1147-1157.
Substantial deletion overlap among divergent Arabidopsis genomes revealed by intersection of short reads and tiling arrays.
Santuari L., Pradervand S., Amiguet-Vercher A.M., Thomas J., Dorcey E., Harshman K., Xenarios I., Juenger T.E., Hardtke C.S., 2010. Genome Biology, 11 (1) pp. R4.
 
A novel method of dynamic culture surface expansion improves mesenchymal stem cell proliferation and phenotype.
Majd H., Wipff P.J., Buscemi L., Bueno M., Vonwil D., Quinn T.M., Hinz B., 2009. Stem Cells, 27 (1) pp. 200-209.
 
Comparative genomic and phylogeographic analysis of Mycobacterium leprae.
Monot M., Honoré N., Garnier T., Zidane N., Sherafi D., Paniz-Mondolfi A., Matsuoka M., Taylor G.M., Donoghue H.D., Bouwman A. et al., 2009. Nature Genetics, 41 (12) pp. 1282-1289. Peer-reviewed.
Comprehensive analysis of Arabidopsis expression level polymorphisms with simple inheritance.
Plantegenet S., Weber J., Goldstein D.R., Zeller G., Nussbaumer C., Thomas J., Weigel D., Harshman K., Hardtke C.S., 2009. Molecular Systems Biology, 5 p. 242. Peer-reviewed.
 
Drosophila intestinal response to bacterial infection: activation of host defense and stem cell proliferation.
Buchon N., Broderick N.A., Poidevin M., Pradervand S., Lemaitre B., 2009. Cell Host and Microbe, 5 (2) pp. 200-211.
 
Evolutionary origin and functions of retrogene introns.
Fablet M., Bueno M., Potrzebowski L., Kaessmann H., 2009. Molecular Biology and Evolution, 26 (9) pp. 2147-2156. Peer-reviewed.
 
Gene expression profiling in the human pathogenic dermatophyte Trichophyton rubrum during growth on proteins.
Zaugg C., Monod M., Weber J., Harshman K., Pradervand S., Thomas J., Bueno M., Giddey K., Staib P., 2009. Eukaryotic Cell, 8 (2) pp. 241-250. Peer-reviewed.
 
How to keep the brain awake? The complex molecular pharmacogenetics of wake promotion.
Hasan S., Pradervand S., Ahnaou A., Drinkenburg W., Tafti M., Franken P., 2009. Neuropsychopharmacology, 34 (7) pp. 1625-1640. Peer-reviewed.
 
Impact of normalization on miRNA microarray expression profiling.
Pradervand S., Weber J., Thomas J., Bueno M., Wirapati P., Lefort K., Dotto G.P., Harshman K., 2009. RNA, 15 (3) pp. 493-501. Peer-reviewed.
 
Molecular clock is involved in predictive circadian adjustment of renal function.
Zuber A.M., Centeno G., Pradervand S., Nikolaeva S., Maquelin L., Cardinaux L., Bonny O., Firsov D., 2009. Proceedings of the National Academy of Sciences of the United States of America, 106 (38) pp. 16523-16528. Peer-reviewed.
Phytochrome interacting factors 4 and 5 redundantly limit seedling de-etiolation in continuous far-red light.
Lorrain S., Trevisan M., Pradervand S., Fankhauser C., 2009. The Plant Journal, 60 (3) pp. 449-461. Peer-reviewed.
 
Profiling of T-cell receptor signaling complex assembly in human CD4 T-lymphocytes using RP protein arrays.
Brembilla N.C., Cohen-Salmon I., Weber J., Rüegg C., Quadroni M., Harshman K., Doucey M.A., 2009. Proteomics, 9 (2) pp. 299-309.
 
Segmental copy number variation shapes tissue transcriptomes.
Henrichsen C.N., Vinckenbosch N., Zöllner S., Chaignat E., Pradervand S., Schütz F., Ruedi M., Kaessmann H., Reymond A., 2009. Nature Genetics, 41 (4) pp. 424-429. Peer-reviewed.
 
Sumoylated PPARalpha mediates sex-specific gene repression and protects the liver from estrogen-induced toxicity in mice.
Leuenberger N., Pradervand S., Wahli W., 2009. Journal of Clinical Investigation, 119 (10) pp. 3138-3148.
 
Affymetrix Whole-Transcript Human Gene 1.0 ST array is highly concordant with standard 3' expression arrays.
Pradervand S., Paillusson A., Thomas J., Weber J., Wirapati P., Hagenbüchle O., Harshman K., 2008. BioTechniques, 44 (6) pp. 759-762. Peer-reviewed.
 
c-Cbl expression levels regulate the functional responses of human central and effector memory CD4 T cells.
Brembilla N.C., Weber J., Rimoldi D., Pradervand S., Schütz F., Pantaleo G., Rüegg C., Quadroni M., Harshman K., Doucey M.A., 2008. Blood, 112 (3) pp. 652-660.
 
Host and invader impact of transfer of the clc genomic island into Pseudomonas aeruginosa PAO1
Gaillard M., Pernet N., Vogne C., Hagenbuchle O., van der Meer J. R., 2008. Proceedings of the National Academy of Sciences of the United States of America, 105 (19) pp. 7058-7063. Peer-reviewed.
Meta-analysis of gene expression profiles in breast cancer: toward a unified understanding of breast cancer subtyping and prognosis signatures.
Wirapati P., Sotiriou C., Kunkel S., Farmer P., Pradervand S., Haibe-Kains B., Desmedt C., Ignatiadis M., Sengstag T., Schütz F. et al., 2008. Breast Cancer Research, 10 (4) pp. R65.
 
Homer1a is a core brain molecular correlate of sleep loss.
Maret S., Dorsaz S., Gurcel L., Pradervand S., Petit B., Pfister C., Hagenbuchle O., O'Hara B.F., Franken P., Tafti M., 2007. Proceedings of the National Academy of Sciences of the United States of America, 104 (50) pp. 20090-20095. Peer-reviewed.
 
RACE: Remote Analysis Computation for gene Expression data
Psarros M., Heber S., Sick M., Thoppae G., Harshman K., Sick B., 2005/07. Nucleic Acids Research, 33 (Web Server issue) pp. W638-43.
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