Centre intégratif de génomique

Equipe principale | CIG Services communs | Genomics Technologies Facility (GTF) | Group Benton | Group Desvergne | Group Fajas | Group Fankhauser | Group Franken | Group Gambetta | Group Gatfield | Group Hernandez | Group Herr | Group Michalik | Group Reymond | Group Stasiak | Group Thorens | Group Wahli | Group van Leeuwen | Mouse Metabolic Evaluation Facility (MEF) | Protein Analysis Facility (PAF)
Publications | Mémoires et thèses

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81 publications

Sous presse | 2019 | 2018 | 2017 | 2016 | 2015 | 2014 | 2013 | 2012 | 2011 | 2010 | 2009 | 2008 | 2007 | 2006 | 2005 | 2004 |
PHYTOCHROME INTERACTING FACTOR 7 is important for early responses to elevated temperature in Arabidopsis seedlings.
Fiorucci A.S., Galvão V.C., Ince Y.Ç., Boccaccini A., Goyal A., Allenbach Petrolati L., Trevisan M., Fankhauser C. The New phytologist. Peer-reviewed.
Molecular mechanisms underlying phytochrome-controlled morphogenesis in plants.
Legris M., Ince Y.Ç., Fankhauser C., 2019/11/19. Nature communications, 10 (1) p. 5219. Peer-reviewed.
PIF transcription factors link a neighbor threat cue to accelerated reproduction in Arabidopsis.
Galvāo V.C., Fiorucci A.S., Trevisan M., Franco-Zorilla J.M., Goyal A., Schmid-Siegert E., Solano R., Fankhauser C., 2019/09/05. Nature communications, 10 (1) p. 4005. Peer-reviewed.
Genome-wide RNA-seq analysis indicates that the DAG1 transcription factor promotes hypocotyl elongation acting on ABA, ethylene and auxin signaling.
Lorrai R., Gandolfi F., Boccaccini A., Ruta V., Possenti M., Tramontano A., Costantino P., Lepore R., Vittorioso P., 2018/10/26. Scientific reports, 8 (1) p. 15895. Peer-reviewed.
Changes in resource partitioning between and within organs support growth adjustment to neighbor proximity in <i>Brassicaceae</i> seedlings.
de Wit M., George G.M., Ince Y.Ç., Dankwa-Egli B., Hersch M., Zeeman S.C., Fankhauser C., 2018/10/16. Proceedings of the National Academy of Sciences of the United States of America, 115 (42) pp. E9953-E9961. Peer-reviewed.
<i>Arabidopsis</i> RUP2 represses UVR8-mediated flowering in noninductive photoperiods.
Arongaus A.B., Chen S., Pireyre M., Glöckner N., Galvão V.C., Albert A., Winkler J.B., Fankhauser C., Harter K., Ulm R., 2018/10/01. Genes & development, 32 (19-20) pp. 1332-1343. Peer-reviewed.
A phosphorylation switch turns a positive regulator of phototropism into an inhibitor of the process.
Schumacher P., Demarsy E., Waridel P., Petrolati L.A., Trevisan M., Fankhauser C., 2018/06/19. Nature communications, 9 (1) p. 2403. Peer-reviewed.
Abscisic acid inhibits hypocotyl elongation acting on gibberellins, DELLA proteins and auxin.
Lorrai R., Boccaccini A., Ruta V., Possenti M., Costantino P., Vittorioso P., 2018. AoB PLANTS, 10 (5) pp. ply061. Peer-reviewed.
Low number of fixed somatic mutations in a long-lived oak tree.
Schmid-Siegert E., Sarkar N., Iseli C., Calderon S., Gouhier-Darimont C., Chrast J., Cattaneo P., Schütz F., Farinelli L., Pagni M. et al., 2017/12. Nature plants, 3 (12) pp. 926-929. Peer-reviewed.
Plant Strategies for Enhancing Access to Sunlight.
Fiorucci A.S., Fankhauser C., 2017/09/11. Current biology, 27 (17) pp. R931-R940. Peer-reviewed.
BLADE-ON-PETIOLE proteins act in an E3 ubiquitin ligase complex to regulate PHYTOCHROME INTERACTING FACTOR 4 abundance.
Zhang B., Holmlund M., Lorrain S., Norberg M., Bakó L., Fankhauser C., Nilsson O., 2017/08/22. eLife, 6 pp. e26759. Peer-reviewed.
Local auxin production underlies a spatially restricted neighbor-detection response in <i>Arabidopsis</i>.
Michaud O., Fiorucci A.S., Xenarios I., Fankhauser C., 2017/07/11. Proceedings of the National Academy of Sciences of the United States of America, 114 (28) pp. 7444-7449. Peer-reviewed.
UV-B Perceived by the UVR8 Photoreceptor Inhibits Plant Thermomorphogenesis.
Hayes S., Sharma A., Fraser D.P., Trevisan M., Cragg-Barber C.K., Tavridou E., Fankhauser C., Jenkins G.I., Franklin K.A., 2017/01/09. Current biology, 27 (1) pp. 120-127. Peer-reviewed.
Combined Experimental and Computational Approaches Reveal Distinct pH Dependence of Pectin Methylesterase Inhibitors.
Hocq L., Sénéchal F., Lefebvre V., Lehner A., Domon J.M., Mollet J.C., Dehors J., Pageau K., Marcelo P., Guérineau F. et al., 2017. Plant Physiology, 173 (2) pp. 1075-1093. Peer-reviewed.
The influence of greenhouse-integrated photovoltaics on crop production
Allardyce C.S., Fankhauser C., Zakeeruddin S.M., Grätzel M., Dyson P.J., 2017. Solar Energy, 155 pp. 517-522. Peer-reviewed.
Integration of Phytochrome and Cryptochrome Signals Determines Plant Growth during Competition for Light.
de Wit M., Keuskamp D.H., Bongers F.J., Hornitschek P., Gommers CMM, Reinen E., Martínez-Cerón C., Fankhauser C., Pierik R., 2016/12/19. Current biology, 26 (24) pp. 3320-3326. Peer-reviewed.
Shade Promotes Phototropism through Phytochrome B-Controlled Auxin Production.
Goyal A., Karayekov E., Galvão V.C., Ren H., Casal J.J., Fankhauser C., 2016/12/19. Current biology, 26 (24) pp. 3280-3287. Peer-reviewed.
Neighbor Detection Induces Organ-Specific Transcriptomes, Revealing Patterns Underlying Hypocotyl-Specific Growth.
Kohnen M.V., Schmid-Siegert E., Trevisan M., Petrolati L.A., Sénéchal F., Müller-Moulé P., Maloof J., Xenarios I., Fankhauser C., 2016/12. The Plant cell, 28 (12) pp. 2889-2904. Peer-reviewed.
REPRESSOR OF ULTRAVIOLET-B PHOTOMORPHOGENESIS function allows efficient phototropin mediated ultraviolet-B phototropism in etiolated seedlings.
Vanhaelewyn L., Schumacher P., Poelman D., Fankhauser C., Van Der Straeten D., Vandenbussche F., 2016/11. Plant science : an international journal of experimental plant biology, 252 pp. 215-221. Peer-reviewed.
Light-Mediated Hormonal Regulation of Plant Growth and Development.
de Wit M., Galvão V.C., Fankhauser C., 2016/04/29. Annual review of plant biology, 67 pp. 513-537. Peer-reviewed.
A photoreceptor's on-off switch.
Fankhauser C., Ulm R., 2016/03/21. Science (New York, N.Y.), 354 (6310) pp. 282-283. Peer-reviewed.
Photomorphogenesis and Photoreceptors
de Wit M., Pierik R, 2016. pp. 171-186 dans Hikosaka K., Niinemets U., Anten N.P.R. (eds.) Canopy Photosynthesis: From Basics to Applications, Springer.
Shadow on the Plant: A Strategy to Exit.
Fankhauser C., Batschauer A., 2016. Cell, 164 (1-2) pp. 15-17. Peer-reviewed.
Contrasting growth responses in lamina and petiole during neighbor detection depend on differential auxin responsiveness rather than different auxin levels.
de Wit M., Ljung K., Fankhauser C., 2015. New Phytologist, 208 (1) pp. 198-209.
Gibberellic acid signaling is required for ambient temperature-mediated induction of flowering in Arabidopsis thaliana.
Galvão V.C., Collani S., Horrer D., Schmid M., 2015. Plant Journal, 84 (5) pp. 949-962.
Lipid anchoring of Arabidopsis phototropin 1 to assess the functional significance of receptor internalization: should I stay or should I go?
Preuten T., Blackwood L., Christie J.M., Fankhauser C., 2015. New Phytologist, 206 (3) pp. 1038-1050. Peer-reviewed.
Modelling of iron-filled magneto-active polymers with a dispersed chain-like microstructure
Saxena P., Pelteret J.P., Steinmann P., 2015. European Journal of Mechanics A Solids, 50 pp. 132-151.
Modelling the curing process in magneto-sensitive polymers: Rate-dependence and shrinkage
Hossain M., Saxena P., Steinmann P., 2015. Internationsl Journal of Non-linear Mechaniscs, 74 pp. 108-121.
Modelling the mechanical aspects of the curing process of magneto-sensitive elastomeric materials
Hossain M., Saxena P., Steinmann P., 2015. International Journal of Solids and Structures, 58 pp. 257-269.
Plant Phototropic Growth.
Fankhauser C., Christie J.M., 2015. Current Biology, 25 (9) pp. R384-R389. Peer-reviewed.
Sensing the light environment in plants: photoreceptors and early signaling steps.
Galvão V.C., Fankhauser C., 2015. Current Opinion In Neurobiology, 34 pp. 46-53.
Auxin-mediated plant architectural changes in response to shade and high temperature.
de Wit M., Lorrain S., Fankhauser C., 2014. Physiologia Plantarum, 151 (1) pp. 13-24. Peer-reviewed.
Differentially phased leaf growth and movements in Arabidopsis depend on coordinated circadian and light regulation.
Dornbusch T., Michaud O., Xenarios I., Fankhauser C., 2014. Plant Cell, 26 (10) pp. 3911-3921. Peer-reviewed.
Light intensity modulates the regulatory network of the shade avoidance response in Arabidopsis.
Hersch M., Lorrain S., de Wit M., Trevisan M., Ljung K., Bergmann S., Fankhauser C., 2014. Proceedings of the National Academy of Sciences of the United States of America, 111 (17) pp. 6515-6520. Peer-reviewed.
Plasma membrane H⁺ -ATPase regulation is required for auxin gradient formation preceding phototropic growth.
Hohm T., Demarsy E., Quan C., Allenbach Petrolati L., Preuten T., Vernoux T., Bergmann S., Fankhauser C., 2014. Molecular Systems Biology, 10 (9) p. 751. Peer-reviewed.
Reduced phototropism in pks mutants may be due to altered auxin-regulated gene expression or reduced lateral auxin transport.
Kami C., Allenbach L., Zourelidou M., Ljung K., Schütz F., Isono E., Watahiki M.K., Yamamoto K.T., Schwechheimer C., Fankhauser C., 2014. Plant Journal, 77 (3) pp. 393-403. Peer-reviewed.
Shade avoidance: phytochrome signalling and other aboveground neighbour detection cues.
Pierik R., de Wit M., 2014. Journal of Experimental Botany, 65 (11) pp. 2815-2824.
Conditional Involvement of CONSTITUTIVE PHOTOMORPHOGENIC1 in the Degradation of Phytochrome A.
Debrieux D., Trevisan M., Fankhauser C., 2013. Plant Physiology, 161 (4) pp. 2136-2145.
D6PK AGCVIII Kinases Are Required for Auxin Transport and Phototropic Hypocotyl Bending in Arabidopsis.
Willige B.C., Ahlers S., Zourelidou M., Barbosa I.C., Demarsy E., Trevisan M., Davis P.A., Roelfsema M.R., Hangarter R., Fankhauser C. et al., 2013. Plant Cell, 25 (5) pp. 1674-1688.
Defining the site of light perception and initiation of phototropism in Arabidopsis.
Preuten T., Hohm T., Bergmann S., Fankhauser C., 2013. Current Biology, 23 (19) pp. 1934-1938.
Phosphorylation of Phytochrome B Inhibits Light-Induced Signaling via Accelerated Dark Reversion in Arabidopsis.
Medzihradszky M., Bindics J., Adám E., Viczián A., Klement E., Lorrain S., Gyula P., Mérai Z., Fankhauser C., Medzihradszky K.F. et al., 2013. Plant Cell, 25 (2) pp. 535-544.
Phototropism: at the crossroads of light-signaling pathways.
Goyal A., Szarzynska B., Fankhauser C., 2013. Trends in Plant Science, 18 (7) pp. 393-401. Peer-reviewed.
Phototropism: Translating light into directional growth.
Hohm T., Preuten T., Fankhauser C., 2013. American Journal of Botany, 100 (1) pp. 47-59. Peer-reviewed.
Verification at the protein level of the PIF4-mediated external coincidence model for the temperature-adaptive photoperiodic control of plant growth in Arabidopsis thaliana.
Yamashino T., Nomoto Y., Lorrain S., Miyachi M., Ito S., Nakamichi N., Fankhauser C., Mizuno T., 2013. Plant Signaling and Behavior, 8 (3) pp. e23390.
Atomic Force Microscopy Stiffness Tomography on Living Arabidopsis thaliana Cells Reveals the Mechanical Properties of Surface and Deep Cell-Wall Layers during Growth.
Radotić K., Roduit C., Simonović J., Hornitschek P., Fankhauser C., Mutavd?ić D. , Steinbach G., Dietler G., Kasas S., 2012. Biophysical Journal, 103 (3) pp. 386-394.
Measuring the diurnal pattern of leaf hyponasty and growth in Arabidopsis - a novel phenotyping approach using laser scanning
Dornbusch T., Lorrain S., Kuznetsov D., Fortier A., Liechti R., Xenarios I., Fankhauser C., 2012. Functional Plant Biology, 39 (10-11) pp. 860-869.
Nuclear phytochrome a signaling promotes phototropism in Arabidopsis.
Kami C., Hersch M., Trevisan M., Genoud T., Hiltbrunner A., Bergmann S., Fankhauser C., 2012. Plant Cell, 24 (2) pp. 566-576.
Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling.
Hornitschek P., Kohnen M.V., Lorrain S., Rougemont J., Ljung K., López-Vidriero I., Franco-Zorrilla J.M., Solano R., Trevisan M., Pradervand S. et al., 2012. Plant Journal, 71 (5) pp. 699-711.
Phytochrome Kinase Substrate 4 is phosphorylated by the phototropin 1 photoreceptor.
Demarsy E., Schepens I., Okajima K., Hersch M., Bergmann S., Christie J., Shimazaki K., Tokutomi S., Fankhauser C., 2012. EMBO Journal, 31 (16) pp. 3457-3467.
Plant development: should I stop or should I grow?
Lorrain S., Fankhauser C., 2012. Current Biology, 22 (16) pp. R645-R647.
Spatially and genetically distinct control of seed germination by phytochromes A and B.
Lee K.P., Piskurewicz U., Turečková V., Carat S., Chappuis R., Strnad M., Fankhauser C., Lopez-Molina L., 2012. Genes and Development, 26 (17) pp. 1984-1996.
A hormonal regulatory module that provides flexibility to tropic responses.
Gallego-Bartolomé J., Kami C., Fankhauser C., Alabadí D., Blázquez M.A., 2011. Plant Physiology, 156 (4) pp. 1819-1825.
Light receptor action is critical for maintaining plant biomass at warm ambient temperatures.
Foreman J., Johansson H., Hornitschek P., Josse E.M., Fankhauser C., Halliday K.J., 2011. Plant Journal, 65 (3) pp. 441-452.
Light-mediated polarization of the PIN3 auxin transporter for the phototropic response in Arabidopsis.
Ding Z., Galván-Ampudia C.S., Demarsy E., Łangowski Ł., Kleine-Vehn J., Fan Y., Morita M.T., Tasaka M., Fankhauser C., Offringa R. et al., 2011. Nature Cell Biology, 13 (4) pp. 447-452.
Light-regulated interactions with SPA proteins underlie cryptochrome-mediated gene expression.
Fankhauser C., Ulm R., 2011. Genes and Development, 25 (10) pp. 1004-1009.
Light-induced degradation of phyA is promoted by transfer of the photoreceptor into the nucleus.
Debrieux D., Fankhauser C., 2010. Plant Molecular Biology, 73 (6) pp. 687-695. Peer-reviewed.
Light-regulated plant growth and development.
Kami C., Lorrain S., Hornitschek P., Fankhauser C., 2010. Current Topics in Developmental Biology, 91 pp. 29-66.
The Arabidopsis PHYTOCHROME KINASE SUBSTRATE2 protein is a phototropin signaling element that regulates leaf flattening and leaf positioning.
de Carbonnel M., Davis P., Roelfsema M.R., Inoue S., Schepens I., Lariguet P., Geisler M., Shimazaki K., Hangarter R., Fankhauser C., 2010. Plant Physiology, 152 (3) pp. 1391-1405. Peer-reviewed.
Higher plants use LOV to perceive blue light.
Demarsy E., Fankhauser C., 2009. Current Opinion in Plant Biology, 12 (1) pp. 69-74. Peer-reviewed.
Inhibition of the shade avoidance response by formation of non-DNA binding bHLH heterodimers.
Hornitschek P., Lorrain S., Zoete V., Michielin O., Fankhauser C., 2009. EMBO journal, 28 (24) pp. 3893-3902.
Phytochrome interacting factors 4 and 5 redundantly limit seedling de-etiolation in continuous far-red light.
Lorrain S., Trevisan M., Pradervand S., Fankhauser C., 2009. The Plant Journal, 60 (3) pp. 449-461. Peer-reviewed.
PIF3 is a repressor of chloroplast development.
Stephenson P.G., Fankhauser C., Terry M.J., 2009. Proceedings of the National Academy of Sciences of the United States of America, 106 (18) pp. 7654-7659. Peer-reviewed.
A molecular framework for light and gibberellin control of cell elongation.
de Lucas M., Davière J.M., Rodríguez-Falcón M., Pontin M., Iglesias-Pedraz J.M., Lorrain S., Fankhauser C., Blázquez M.A., Titarenko E., Prat S., 2008. Nature, 451 (7177) pp. 480-484. Peer-reviewed.
FHY1 mediates nuclear import of the light-activated phytochrome A photoreceptor.
Genoud T., Schweizer F., Tscheuschler A., Debrieux D., Casal J.J., Schäfer E., Hiltbrunner A., Fankhauser C., 2008. PLoS genetics, 4 (8) pp. e1000143. Peer-reviewed.
PHYTOCHROME KINASE SUBSTRATE1 regulates root phototropism and gravitropism.
Boccalandro H.E., De Simone S.N., Bergmann-Honsberger A., Schepens I., Fankhauser C., Casal J.J., 2008. Plant Physiology, 146 (1) pp. 108-115. Peer-reviewed.
PHYTOCHROME KINASE SUBSTRATE4 modulates phytochrome-mediated control of hypocotyl growth orientation
Schepens I., Boccalandro H. E., Kami C., Casal J. J., Fankhauser C., 2008. Plant Physiology, 147 (2) pp. 661-671. Peer-reviewed.
Phytochrome-mediated inhibition of shade avoidance involves degradation of growth-promoting bHLH transcription factors
Lorrain S., Allen T., Duek P. D., Whitelam G. C., Fankhauser C., 2008. Plant Journal, 53 (2) pp. 312-323. Peer-reviewed.
The evolutionary conserved BER1 gene is involved in microtubule stability in yeast
Fiechter V., Cameroni E., Cerutti L., De V. C., Barral Y., Fankhauser C., 2008. Current Genetics, 53 (2) pp. 107-115. Peer-reviewed.
The protein phosphatase 7 regulates phytochrome signaling in Arabidopsis.
Genoud T., Santa Cruz M.T., Kulisic T., Sparla F., Fankhauser C., Métraux J.P., 2008. PloS one, 3 (7) pp. e2699. Peer-reviewed.
Transposing phytochrome into the nucleus.
Fankhauser C., Chen M., 2008. Trends in Plant Science, 13 (11) pp. 596-601. Peer-reviewed.
Rhythmic growth explained by coincidence between internal and external cues.
Nozue K., Covington M.F., Duek P.D., Lorrain S., Fankhauser C., Harmer S.L., Maloof J.N., 2007. Nature, 448 (7151) pp. 358-361. Peer-reviewed.
The serine-rich N-terminal region of Arabidopsis phytochrome A is required for protein stability.
Trupkin S.A., Debrieux D., Hiltbrunner A., Fankhauser C., Casal J.J., 2007. Plant Molecular Biology, 63 (5) pp. 669-678. Peer-reviewed.
Biochemical and molecular analysis of signaling components
Fankhauser C., Bowler C., 2006. pp. 379-406 dans Schäfer E., Nagy F. (eds.) Photomorphogenesis in Plants and Bacteria chap. 19, Springer.
Let there be light in the nucleus!
Lorrain S., Genoud T., Fankhauser C., 2006. Current Opinion in Plant Biology, 9 (5) pp. 509-514.
PHYTOCHROME KINASE SUBSTRATE 1 is a phototropin 1 binding protein required for phototropism.
Lariguet P., Schepens I., Hodgson D., Pedmale U.V., Trevisan M., Kami C., de Carbonnel M., Alonso J.M., Ecker J.R., Liscum E. et al., 2006. Proceedings of the National Academy of Sciences of the United States of America, 103 (26) pp. 10134-10139. Peer-reviewed.
Quand les plantes sortent de l'ombre
Fankhauser C., Lorrain S., 2006. Pour la science 349 pp. 68-73.
bHLH class transcription factors take centre stage in phytochrome signalling.
Duek P.D., Fankhauser C., 2005. Trends in Plant Science, 10 (2) pp. 51-54. Peer-reviewed.
Nuclear accumulation of the phytochrome A photoreceptor requires FHY1.
Hiltbrunner A., Viczián A., Bury E., Tscheuschler A., Kircher S., Tóth R., Honsberger A., Nagy F., Fankhauser C., Schäfer E., 2005. Current Biology, 15 (23) pp. 2125-2130. Peer-reviewed.
The effect of the light and gravity on hypocotyl growth orientation.
Lariguet P., Fankhauser C., 2005. pp. 277-284 dans Wada M., Shimazaki K., Iino M. (eds.) Light Sensing in Plants, Springer.
Phytochrome-mediated light signalling in Arabidopsis.
Schepens I., Duek P., Fankhauser C., 2004. Current Opinion in Plant Biology, 7 (5) pp. 564-569. Peer-reviewed.
The degradation of HFR1, a putative bHLH class transcription factor involved in light signaling, is regulated by phosphorylation and requires COP1.
Duek P.D., Elmer M.V., van Oosten V.R., Fankhauser C., 2004. Current Biology, 14 (24) pp. 2296-2301. Peer-reviewed.
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