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Centre intégratif de génomique

Coordonnées Equipe Publications  
Equipe principale | CIG Services communs | Genomics Technologies Facility (GTF) | Group Benton | Group Desvergne | Group Dion | Group Fajas | Group Fankhauser | Group Franken | Group Gambetta | Group Gatfield | Group Hamaratoglu Dion | Group Hernandez | Group Herr | Group Michalik | Group Reymond | Group Stasiak | Group Thorens | Group Wahli | Mouse Metabolic Evaluation Facility (MEF) | Protein Analysis Facility (PAF) |

Publications | Mémoires et thèses

La recherche avancée est accessible via Serval

Les publications peuvent être gérées en accédant à Serval via MyUnil


23 publications

2018 | 2017 | 2016 | 2015 | 2014 | 2013 | 2012 | 2011 | 2010 |
 
Repurposing of promoters and enhancers during mammalian evolution.
Carelli F.N., Liechti A., Halbert J., Warnefors M., Kaessmann H., 2018/10/04. Nature communications, 9 (1) p. 4066. Peer-reviewed.
[DOI] [WoS] [Pmid] [serval:BIB_B849DBF5E53D]
 
Circadian Clocks and UPR: New Twists as the Story Unfolds.
Milev N.B., Gatfield D., 2018/01/08. Developmental cell, 44 (1) pp. 7-9. Peer-reviewed.
 
Charting DENR-dependent translation reinitiation uncovers predictive uORF features and links to circadian timekeeping via Clock
Castelo-Szekely V, De Matos M, Gatfield D, 2018. bioRxiv.
[DOI] [serval:BIB_87156792CB2B]
Metabolic oscillations on the circadian time scale in <i>Drosophila</i> cells lacking clock genes.
Rey G., Milev N.B., Valekunja U.K., Ch R., Ray S., Silva Dos Santos M., Nagy A.D., Antrobus R., MacRae J.I., Reddy A.B., 2018. Molecular Systems Biology, 14 (8) pp. e8376. Peer-reviewed.
 
Convergent origination of a <i>Drosophila</i>-like dosage compensation mechanism in a reptile lineage.
Marin R., Cortez D., Lamanna F., Pradeepa M.M., Leushkin E., Julien P., Liechti A., Halbert J., Brüning T., Mössinger K. et al., 2017/12. Genome research, 27 (12) pp. 1974-1987. Peer-reviewed.
[DOI] [WoS] [Pmid] [serval:BIB_400B3F2747AB]
Translational contributions to tissue specificity in rhythmic and constitutive gene expression.
Castelo-Szekely V., Arpat A.B., Janich P., Gatfield D., 2017/06/16. Genome biology, 18 (1) p. 116. Peer-reviewed.
 
Diurnal Oscillations in Liver Mass and Cell Size Accompany Ribosome Assembly Cycles.
Sinturel F., Gerber A., Mauvoisin D., Wang J., Gatfield D., Stubblefield J.J., Green C.B., Gachon F., Schibler U., 2017. Cell, 169 (4) pp. 651-663.e14. Peer-reviewed.
 
Guidelines for Genome-Scale Analysis of Biological Rhythms.
Hughes M.E., Abruzzi K.C., Allada R., Anafi R., Arpat A.B., Asher G., Baldi P., de Bekker C., Bell-Pedersen D., Blau J. et al., 2017. Journal of Biological Rhythms, 32 (5) pp. 380-393. Peer-reviewed.
Analyzing the temporal regulation of translation efficiency in mouse liver.
Janich P., Arpat A.B., Castelo-Szekely V., Gatfield D., 2016. Genomics Data, 8 pp. 41-44. Peer-reviewed.
 
Translational contributions to tissue-specificity in rhythmic and constitutive gene expression.
Castelo-Szekely V., Arpat A.B., Janich P., Gatfield D., 2016. bioRxiv, 060368 pp. NA.
[DOI] [serval:BIB_5DA00A50C88B]
A neuron-specific deletion of the microRNA-processing enzyme DICER induces severe but transient obesity in mice.
Mang G.M., Pradervand S., Du N.H., Arpat A.B., Preitner F., Wigger L., Gatfield D., Franken P., 2015. PLoS One, 10 (1) pp. e0116760.
Ribosome profiling reveals the rhythmic liver translatome and circadian clock regulation by upstream open reading frames.
Janich P., Arpat A.B., Castelo-Szekely V., Lopes M., Gatfield D., 2015. Genome Research, 25 (12) pp. 1848-1859. Peer-reviewed.
 
Circadian control of tissue homeostasis and adult stem cells.
Janich P., Meng Q.J., Benitah S.A., 2014. Current Opinion in Cell Biology, 31C pp. 8-15.
 
CLOCK-controlled polyphonic regulation of circadian rhythms through canonical and noncanonical E-boxes.
Yoshitane H., Ozaki H., Terajima H., Du N.H., Suzuki Y., Fujimori T., Kosaka N., Shimba S., Sugano S., Takagi T. et al., 2014. Molecular and Cellular Biology, 34 (10) pp. 1776-1787.
Human Prominin-1 (CD133) Is Detected in Both Neoplastic and Non-Neoplastic Salivary Gland Diseases and Released into Saliva in a Ubiquitinated Form.
Karbanová J., Laco J., Marzesco A.M., Janich P., Voborníková M., Mokrý J., Fargeas C.A., Huttner W.B., Corbeil D., 2014. PLoS One, 9 (6) pp. e98927.
MicroRNAs shape circadian hepatic gene expression on a transcriptome-wide scale.
Du N.H., Arpat A.B., De Matos M., Gatfield D., 2014. Elife, 3 pp. e02510.
 
Robust synchronization of coupled circadian and cell cycle oscillators in single mammalian cells.
Bieler J., Cannavo R., Gustafson K., Gobet C., Gatfield D., Naef F., 2014. Molecular Systems Biology, 10 (7) p. 739. Peer-reviewed.
 
Control and host-dependent activation of insect toxin expression in a root-associated biocontrol pseudomonad.
Péchy-Tarr M., Borel N., Kupferschmied P., Turner V., Binggeli O., Radovanovic D., Maurhofer M., Keel C., 2013. Environmental Microbiology, 15 (3) pp. 736-750.
 
Functional significance of thermosensitive transient receptor potential melastatin channel 8 (TRPM8) expression in immortalized human corneal endothelial cells.
Mergler S., Mertens C., Valtink M., Reinach P.S., Székely V.C., Slavi N., Garreis F., Abdelmessih S., Türker E., Fels G. et al., 2013. Experimental Eye Research, 116 pp. 337-349.
 
Human epidermal stem cell function is regulated by circadian oscillations.
Janich P., Toufighi K., Solanas G., Luis N.M., Minkwitz S., Serrano L., Lehner B., Benitah S.A., 2013. Cell Stem Cell, 13 (6) pp. 745-753. Peer-reviewed.
 
CAVIN-3 regulates circadian period length and PER:CRY protein abundance and interactions.
Schneider K., Köcher T., Andersin T., Kurzchalia T., Schibler U., Gatfield D., 2012. EMBO Reports, 13 (12) pp. 1138-1144.
 
Mammalian genes are transcribed with widely different bursting kinetics.
Suter D.M., Molina N., Gatfield D., Schneider K., Schibler U., Naef F., 2011. Science, 332 (6028) pp. 472-474.
 
MicroRNA-122 modulates the rhythmic expression profile of the circadian deadenylase Nocturnin in mouse liver.
Kojima S., Gatfield D., Esau C.C., Green C.B., 2010. PLoS One, 5 (6) pp. e11264.
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